Research Article
Enhancing De Novo Transcriptome Assembly by Incorporating Multiple Overlap Sizes
Table 2
Evaluation for assemblies of a real transcriptome dataset of mice with Velvet and compare with Euler-mix.
| | Assembly pipeline | Number of contigs >= 100bp | Mean size
(bp) | Largest contig | N50 | # of transcripts detected | Precision
(overlap) | Recall
(overlap) | F-measure
(overlap) | Precision
(consistent) | Recall
(consistent) | F-measure
(consistent) |
| | Velvet (75–21) Velvet (39) | 80644 | 336.32 | 6668 | 477 | 10646 | 96.44% | 39.97% | 56.52% | 89.82% | 22.30% | 35.73% | | Velvet (33) | 106546 | 191.41 | 2375 | 202 | 2544 | 97.59% | 28.27% | 43.85% | 86.23% | 16.22% | 27.31% |
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