Differential Expression Analysis for RNA-Seq Data

Table 3

Comparison of methods on different datasets.

Samples	Method	Number of genes present in only one samples	Number of genes present in both samples
Normal versus HL60	likelihood ratio	19	57
	Bayesian	19	58
	DESeq	0	3
	EdgeR	0	4
Normal versus K562	likelihood ratio	2	57
	Bayesian	2	53
	DESeq	0	3
	EdgeR	0	1
Globin reduced versus nonreduced	likelihood ratio	7	2513
	Bayesian	7	2344
	DESeq	5	1505
	EdgeR	7	2987