Research Article

HMEC: A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction

Table 2

Reconstruction rate and running time of HapCUT and HMEC with 5% coverage on HuRef data.

Error rate HapCUT HMEC
Reconstruction rate Time (sec)Reconstruction rate Time (sec)

10 0.986 40.582 0.859 0.119
15 0.913 38.282 0.889 0.125
20 0.875 46.324 0.811 0.129
25 0.902 47.101 0.827 0.130
30 0.840 39.196 0.802 0.125
40 0.694 44.792 0.665 0.129