Table of Contents
ISRN Bioinformatics
Volume 2013, Article ID 481545, 8 pages
http://dx.doi.org/10.1155/2013/481545
Research Article

Stormbow: A Cloud-Based Tool for Reads Mapping and Expression Quantification in Large-Scale RNA-Seq Studies

1Systems Pharmacology and Biomarkers, Janssen Research & Development, LLC, 3210 Merryfield Row, San Diego, CA 92121, USA
2High Performance & Scientific Computing, Janssen Research & Development, LLC, 920 Route 202, Raritan, NJ 08869, USA
3Translational Informatics IT, Janssen Research & Development, LLC, 3210 Merryfield Row, San Diego, CA 92121, USA

Received 8 July 2013; Accepted 7 August 2013

Academic Editors: N. Lemke, K. Mizuguchi, O. Norberto de Souza, and J. T. L. Wang

Copyright © 2013 Shanrong Zhao et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

Descriptions on 178 RNA-Seq samples and their detail running matrices, including (1) the number of pair-ended reads, (2) the original FASTQ file size, (3) the BAM file size after alignment, (4) running times for download of FASTQ files from S3 to EC2, alignment of reads to reference genome, quantification of gene and transcript expressions, upload of results onto S3, and the total running time.

  1. Supplementary Material