Leptospira spp. Prevalence in Small Mammal Populations in Cotonou, Benin

Table 1

Leptospira strains and infections used in secY sequence-based phylogeny.

Number	Code	Serovar	Strain	Species	Reference/genbank
1	1Bif.	Patoc	Patoc I	L. biflexa	NC_010842.1
2	2Bor.	Ballum	Mus 127	L. borgpetersenii	EU357953.1
3	3Bor.	Castellonis	Castellon 3	L. borgpetersenii	EU357955.1
4	4Bor.	Hardjo-bovis	JB197	L. borgpetersenii	CP000350.1
5	5Bor.	Tunis	P 2/65	L. borgpetersenii	EU358064.1
6	6Bor.	Nyanza	Kibos	L. borgpetersenii	EU358037.1
7	7Bor.	Tarassovi	Perepelitsin	L. borgpetersenii	EU358057.1
8	8Int.	Bratislava	Jez Bratislava	L. interrogans	EU357939.1
9	9Int.	Canicola	Hond Utrecht IV	L. interrogans	EU357961.1
10	10Int.	Gem	Simon	L. interrogans	EU358039.1
11	11Int.	Hardjo	Hardjoprajitno	L. interrogans	EU357983.1
12	12Int.	Hebdomadis	Hebdomadis	L. interrogans	EU357974.1
13	13Int.	Icterohaemorrhagiae	RGA	L. interrogans	EU357997.1
14	14Int.	Pomona	LT 1026	L. interrogans	EU358017.1
15	15Int.	Kuwait	136/2/2	L. interrogans	EU357970.1
16	16Int.	Lai	Lai	L. interrogans	AE010300.2
17	17Int.	Muenchen	München C 90	L. interrogans	EU357938.1
18	18Int.	Pomona	Pomona	L. interrogans	EU358013.1
19	19Kir.	Cynopteri	3522 C	L. kirschneri	EU358027.1
20	20Kir.	Kambale	Kambale	L. kirschneri	EU358030.1
21	21Kir.	Grippotyphosa	Moskva V	L. kirschneri	EU358028.1
22	22Kir.	Bim	1051	L. kirschneri	EU357952.1
23	23Kir.	Ramisi	Musa	L. kirschneri	EU358020.1
24	24Kir.	Mozdok	5621	L. kirschneri	EU358015.1
25	25Kir.	Ndambari	Ndambari	L. kirschneri	EU358001.1
26	26Kir.	Kamituga	Kamituga	L. kirschneri	EU357963.1
27	27Nog.	Argentiniensis	Peludo	L. noguchii	EU357960.1
28	28Nog.	Carimagua	9160	L. noguchii	EU358068.1
29	29Nog.	Huallaga	M 7	L. noguchii	EU357950.1
30	30San.	Beye	1537 U	L. santarosai	EU357981.1
31	31San.	Darien	637 K	L. santarosai	EU358066.1
32	32San.	Gatuni	1473 K	L. santarosai	EU358061.1
33	33San.	Rama	316	L. santarosai	EU358063.1
34	34San.	Rio	Rr 5	L. santarosai	EU358042.1
35	35San.	Shermani	1342 K	L. santarosai	EU357991.1
36	36San.	Tropica	CZ 299	L. santarosai	EU358005.1
37	37Wei.	Coxi	Cox	L. weilii	EU358009.1
38	38Wei.	Langati	M39039	L. weilii	EU358065.1
39	39Ben.	Undefined	418	L. borgpetersenii	This paper
40	40Ben.	Undefined	440	L. interrogans	This paper
41	41Ben.	Undefined	480	L. interrogans	This paper
42	42Ben.	Undefined	617	L. kirschneri	This paper
43	43Ben.	Undefined	823	L. kirschneri	This paper
44	44Ben.	Undefined	896	L. borgpetersenii	This paper
45	45Ben.	Undefined	202	L. borgpetersenii	This paper