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Journal of Biophysics
Volume 2016, Article ID 8683713, 10 pages
Research Article

Structural Stability, Transitions, and Interactions within SoxYZCD-Thiosulphate from Sulfurimonas denitrificans: An In Silico Molecular Outlook for Maintaining Environmental Sulphur Cycle

1Department of Biochemistry and Biophysics, University of Kalyani, Kalyani, Nadia, India
2Department of Biotechnology, National Institute of Technology, Mahatma Gandhi Avenue, Durgapur, West Bengal, India

Received 27 June 2016; Accepted 1 September 2016

Academic Editor: Konstantin Momot

Copyright © 2016 Sujay Ray and Arundhati Banerjee. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

The overall flowhart for the entire study has been depicted in a pictorial manner. The figure begins with the interactive complex formed due to interactions of SoxY, SoxZ, SoxC and SoxD proteins which further interacts with the thiosulphate (ligand). The interacting residues within the entire protein-protein complex (SoxYZCD) were shown in the left hand side. On the right hand side, the interacting residues and the hydrogen bonds formed upon interaction with thiosulphate was also depicted. Furthermore, for the analysis of steady interaction after simulation, the electrostatic surface potentials upon SoxYZ protein complexes and conformational fluctuations in SoxY as well as SoxZ protein upon SoxCD interaction was illustrated through figures. The table at the end shows the steady and spontaneous interaction within the complex (through the calculation of statistically significant free energy of folding value and net area for solvent accessibility for the interacting residues).

  1. Supplementary Material