Table of Contents
Molecular Biology International
Volume 2011, Article ID 120176, 7 pages
http://dx.doi.org/10.4061/2011/120176
Research Article

Allelic Diversity of Major Histocompatibility Complex Class II DRB Gene in Indian Cattle and Buffalo

1Animal Biotechnology Centre, National Dairy Research Institute, Karnal 1, Haryana 23001, India
2National Research Centre on Equines, Sirsa Road, Hisar 1, Haryana 25001, India
3KVK, SKUAST-Jammu, Bhaderwah, Jammu 182221, India

Received 20 September 2010; Accepted 6 January 2011

Academic Editor: Andrzej Kloczkowski

Copyright © 2011 Sachinandan De et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. W. E. Winter, R. H. Buck, and D. A. Verga-House, “Class I and class II major histocompatibility complex molecules,” in Methods in Neurosciences, M. Ian Phillips and D. Evans, Eds., vol. 24 of Neuroimmunology, pp. 61–88, Academic Press, 1995. View at Google Scholar
  2. A. L. Ackerman and P. Cresswell, “Cellular mechanisms governing cross-presentation of exogenous antigens,” Nature Immunology, vol. 5, no. 7, pp. 678–684, 2004. View at Publisher · View at Google Scholar · View at Scopus
  3. J. H. Brown, T. S. Jardetzky, J. C. Gorga et al., “Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1,” Nature, vol. 364, no. 6432, pp. 33–39, 1993. View at Publisher · View at Google Scholar · View at Scopus
  4. J. Kaufman and H. J. Wallny, “Chicken MHC molecules, disease resistance and the evolutionary origin of birds,” Current Topics in Microbiology and Immunology, vol. 212, pp. 129–141, 1996. View at Google Scholar · View at Scopus
  5. R. Harf and S. Sommer, “Association between major histocompatibility complex class II DRB alleles and parasite load in the hairy-footed gerbil, Gerbillurus paeba, in the southern Kalahari,” Molecular Ecology, vol. 14, no. 1, pp. 85–91, 2005. View at Publisher · View at Google Scholar · View at Scopus
  6. M. J. T. van Eijk, J. E. Beever, Y. Da et al., “Genetic mapping of BoLA-A, CYP21, DRB3, DYA, and PRL on BTA23,” Mammalian Genome, vol. 6, no. 2, pp. 151–152, 1995. View at Publisher · View at Google Scholar · View at Scopus
  7. S. A. Ellis and K. T. Ballingall, “Cattle MHC: evolution in action?” Immunological Reviews, vol. 167, pp. 159–168, 1999. View at Google Scholar · View at Scopus
  8. H. A. Lewin, G. C. Russell, and E. J. Glass, “Comparative organization and function of the major histocompatibility complex of domesticated cattle,” Immunological Reviews, vol. 167, pp. 145–158, 1999. View at Google Scholar · View at Scopus
  9. S. Takeshima, N. Saitou, M. Morita, H. Inoko, and Y. Aida, “The diversity of bovine MHC class II DRB3 genes in Japanese Black, Japanese Shorthorn, Jersey and Holstein cattle in Japan,” Gene, vol. 316, no. 1-2, pp. 111–118, 2003. View at Publisher · View at Google Scholar · View at Scopus
  10. S. Konnai, S. N. Takeshima, S. Tajima et al., “The influence of ovine MHC class II DRB1 alleles on immune response in bovine leukemia virus infection,” Microbiology and Immunology, vol. 47, no. 3, pp. 223–232, 2003. View at Google Scholar · View at Scopus
  11. S. Sharif, B. A. Mallard, B. N. Wilkie et al., “Associations of the bovine major histocompatibility complex DRB3 (BoLA-DRB3) with production traits in Canadian dairy cattle,” Animal Genetics, vol. 30, no. 2, pp. 157–160, 1999. View at Publisher · View at Google Scholar · View at Scopus
  12. K. T. Ballingall, S. A. Ellis, N. D. MacHugh, S. D. Archibald, and D. J. McKeever, “The DY genes of the cattle MHC: expression and comparative analysis of an unusual class II MHC gene pair,” Immunogenetics, vol. 55, no. 11, pp. 748–755, 2004. View at Publisher · View at Google Scholar · View at Scopus
  13. E. A. F. Rodrigues, N. B. Stafuzza, A. R. Caetano et al., “Mapping MHC genes in river buffalo,” Developments in Biologicals, vol. 132, pp. 343–346, 2008. View at Google Scholar
  14. S. De, R. K. Singh, and G. Butchaiah, “MHC-DRB exon 2 allele polymorphism in Indian river buffalo (Bubalus bubalis),” Animal Genetics, vol. 33, no. 3, pp. 215–219, 2002. View at Publisher · View at Google Scholar · View at Scopus
  15. L. Sena, M. P. C. Schneider, B. Brenig, R. L. Honeycutt, J. E. Womack, and L. C. Skow, “Polymorphisms in MHC-DRA and -DRB alleles of water buffalo (Bubalus bubalis) reveal different features from cattle DR alleles,” Animal Genetics, vol. 34, no. 1, pp. 1–10, 2003. View at Publisher · View at Google Scholar · View at Scopus
  16. S. De and R. K. Singh, “Identification of new MHC-DRB3 alleles from Indian (Bos indicus) cattle,” Animal Genetics, vol. 37, no. 6, p. 605, 2006. View at Publisher · View at Google Scholar · View at Scopus
  17. P. Stothard, “The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences,” BioTechniques, vol. 28, no. 6, pp. 1102–1104, 2000. View at Google Scholar · View at Scopus
  18. J. D. Thompson, D. G. Higgins, and T. J. Gibson, “CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice,” Nucleic Acids Research, vol. 22, no. 22, pp. 4673–4680, 1994. View at Google Scholar · View at Scopus
  19. K. B. Nicholas and H. B. J. Nicholas, “GeneDoc: a tool for editing and annotating multiple sequence alignments,” 1997, http://www.psc.edu/biomed/genedoc.
  20. S. Kumar, K. Tamura, and M. Nei, “MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment,” Briefings in bioinformatics, vol. 5, no. 2, pp. 150–163, 2004. View at Google Scholar · View at Scopus
  21. M. Nei and T. Gojobori, “Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions,” Molecular Biology and Evolution, vol. 3, no. 5, pp. 418–426, 1986. View at Google Scholar · View at Scopus
  22. T. H. Jukes and C. R. Cantor, “Evolution of protein molecules,” in Mammalian Protein Metabolism, H. M. Munro, Ed., pp. 21–132, Academic Press, New York, NY, USA, 1969. View at Google Scholar
  23. N. Saitou and M. Nei, “The neighbor-joining method: a new method for reconstructing phylogenetic trees,” Molecular Biology and Evolution, vol. 4, no. 4, pp. 406–425, 1987. View at Google Scholar · View at Scopus
  24. E. Zuckerkandl and L. Pauling, “Evolutionary divergence and convergence in proteins,” in Evolving Genes and Proteins, V. Bryson and H. J. Vogel, Eds., pp. 97–166, Academic Press, New York, NY, USA, 1965. View at Google Scholar
  25. J. Felsenstein, “Confidence limits on phylogenies: an approach using the bootstrap,” Evolution, vol. 39, pp. 783–791, 1985. View at Google Scholar
  26. T. Bergstrom and U. Gyllensten, “Evolution of the Mhc class II polymorphism: the rise and fall of class II gene function in primates,” Immunological Reviews, no. 143, pp. 14–31, 1995. View at Google Scholar · View at Scopus
  27. A. L. Hughes and M. Nei, “Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammals,” Molecular Biology and Evolution, vol. 6, no. 6, pp. 559–579, 1989. View at Google Scholar · View at Scopus
  28. S. Mikko, K. Røed, S. Schmutz, and L. Andersson, “Monomorphism and polymorphism at Mhc DRB loci in domestic and wild ruminants,” Immunological Reviews, vol. 167, pp. 169–178, 1999. View at Google Scholar · View at Scopus
  29. R. T. Loftus, D. E. MacHugh, L. O. Ngere et al., “Mitochondrial genetic variation in European, African and Indian cattle populations,” Animal Genetics, vol. 25, no. 4, pp. 265–271, 1994. View at Google Scholar · View at Scopus