A Prevalence of Imprinted Genes within the Total Transcriptomes of Human Tissues and Cells

Table 1

SAGE tag annotation for established and candidate imprinted gene subset.

𝑁	Gene symbol	Gene name	Aliases	Location^a	Status	Expressed; allele	NlaIII tag	Notes	GenBank accession number
1	NDUFA4	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9 kDa		1p13.3	Candidate	Paternal	TTGGAGATCT		BC105295
2	GFI1	Growth-factor-independent 1 transcription repressor	ZNF163	1p22.1	Candidate	Paternal	TGTACCATAG		NM_001127215
3	NM019610	RNA-binding motif protein, X-linked-like 1 (RBMXL1), transcript variant 2		1p22.2	Candidate	Maternal	GCAGATTTAT		NM_019610
4	DIRAS3	DIRAS family, GTP-binding RAS-like 3	ARHI, NOEY2	1p31	Imprinted	Paternal	CAGAAAAAAA	* ^b	BC005362
5	BMP8B	Bone morphogenetic protein 8b	OP2, BMP8, MGC131757	1p35–p32	Candidate	Paternal	AGCAAAACTG	*	NM_001720
6	FUCA1	Fucosidase, alpha-L- 1, tissue	FUCA	1p36.11	Candidate	Paternal	CTATTTAGTT		NM_000147
7	TP73	TP73	P73	1p36.3	Imprinted	Maternal	TGGTACCGCC		NM_001126240
8	PRDM16	PR domain containing 16	MEL1	1p36.32	Candidate	Paternal	AGATTGATAT		NM_022114
9	PEX10	Peroxisomal biogenesis factor 10		1p36.32	Candidate	Maternal	GGAGGCGGCG		NM_002617
10	WDR8	WD repeat domain 8		1p36.32	Candidate	Maternal	TCGGTGCAGG		NM_017818
11	DVL1	Dishevelled, dsh homolog 1 (Drosophila)	DVL	1p36.33	Candidate	Maternal	GCCCGCAGGG		NM_004421
12	Q5EBL5	Family with sequence similarity 132, member A	FAM132A	1p36.33	Candidate	Maternal	GTTTCCAGGC		NM_001014980
13	TMEM52	Transmembrane protein 52		1p36.33	Candidate	Paternal	TTACACCGGC		NM_178545
14	HSPA6	Heat shock 70 kDa protein 6 (HSP70B′)		1q23.3	Candidate	Maternal	TATGAATTTT		NM_002155
15	PTPN14	Protein tyrosine phosphatase, nonreceptor type 14	PEZ	1q32.3	Candidate	Maternal	ACTTTTTCAA	*	BC017300
16	HIST3H2BB	Histone cluster 3, H2bb		1q42.13	Candidate	Maternal	AACTCCTTCG	* #^c	NM_175055
17	OBSCN	Obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	KIAA1556, KIAA1639	1q42.13	Candidate	Paternal	CTGAGCGCCG	*	NM_001098623
18	Q8NGX0	Olfactory receptor, family 11, subfamily L, member 1	OR11L1	1q44	Candidate	Paternal	AGAAGGAAAT	*	NM_001001959
19	VAX2	Ventral anterior homeobox 2	DRES93	2p13.3	Candidate	Maternal	GGCGATGGGG		NM_012476
20	OTX1	Orthodenticle homeobox 1		2p15	Candidate	Maternal	GCGGTTCCAG		BC007621
21	Q96PX6	Coiled-coil domain containing 85A	CCDC85A, KIAA1912	2p16.1	Candidate	Paternal	GCAGATATTC	R^d	NM_001080433
22	ABCG8	ATP-binding cassette, subfamily G (WHITE), member 8		2p21	Candidate	Maternal	GGCTCCAAAA		NM_022437
23	ZFP36L2	Zinc finger protein 36, C3H type-like 2	ERF2, TIS11D	2p21	Candidate	Maternal	TAGAAAGGCA		NM_006887
24	CYP1B1	Cytochrome P450, family 1, subfamily B, polypeptide 1	P4501B1	2p22.2	Candidate	Paternal	AATGCTTTTA	*	NM_000104
25	RPL22	Ribosomal protein L22	EAP	2q13	Candidate	Paternal	GATGCTGCCA	*	CR456873
26	TIGD1	Tigger transposable element derived 1	EEYORE	2q37.1	Candidate	Paternal	CGAAAAGCTT	R	BC063500
27	MYEOV2	Myeloma overexpressed 2		2q37.3	Candidate	Paternal	CAGACTTTTT	*	AF487338
28	FTHFD	10-Formyltetrahydrofolate dehydrogenase	ALDH1L1; DKFZp781N0997	3q21.3	Candidate	Maternal	TCTGCATCTT		BC027241
29	ZIC1	Zic family member 1 (odd-paired homolog, Drosophila)	ZIC, ZNF201	3q24	Candidate	Maternal	ATAATAGTGG		NM_003412
30	HES1	Hairy and enhancer of split 1, (Drosophila)	HHL, HRY, HES-1, bHLHb39, FLJ20408	3q29	Candidate	Paternal	CACTATATTT		NM_005524
31	FGFRL1	Fibroblast growth factor receptor-like 1	FHFR, FGFR5	4p16.3	Candidate	Maternal	AAAGTGCATC		NM_001004358
32	SPON2	Spondin 2, extracellular matrix protein	DIL1	4p16.3	Candidate	Paternal	TTATGGATCT		NM_001128325
33	Q9NYJ6	Immunoglobulin superfamily, member 9	IGSF9, 644ETD8, Dasm1, Kiaa1355-hp, NRT1, Ncaml, mKIAA1355	4q13.2	Candidate	Paternal	TTACTGGCCC	R	BC030141
34	NAP1L5	Nucleosome assembly protein 1-like 5	DRLM	4q22.1	Imprinted	Paternal	TAGCTTTTAG		NM_153757
35	DUX2	Double homeobox 2		4q35.2	Candidate	Paternal	AAGGGGTGGA		NM_012147
36	CDH18	Cadherin 18, type 2	CDH14, CDH24, CDH14L, EY-CADHERIN	5p14.3	Candidate	Paternal	ATCGAAACTG		NM_004934
37	ADAMTS16	ADAM metallopeptidase with thrombospondin type 1 motif, 16	FLJ16731, ADAMTS16s	5p15.32	Candidate	Maternal	TACCCCTGAA	*	AK122980
38	Q8TBP5	Family with sequence similarity 174, member A	FAM174A	5q21.1	Candidate	Paternal	ACCCAGCGGG	*	NM_198507
39	CSF2	Colony-stimulating factor 2 (granulocyte-macrophage)	GMCSF, MGC131935, MGC138897	5q23.3	Candidate	Maternal	GTGGGAGTGG		BC108724
40	BTNL2	Butyrophilin-like 2 (MHC class II associated)	SS2, BTLII, HSBLMHC1	6p21.32	Candidate	Maternal	GAAGGAAAGA		NM_019602
41	FAM50B	Family with sequence similarity 50, member B	X5L, D6S2654E	6p25.2	Imprinted	Paternal	CCTCAGTTTG		BC001261
42	C6orf117	Chromosome 6 open-reading frame 117	MRAP2	6q14.2	Candidate	Paternal	GCAAGCTGTT		NM_138409
43	HYMAI	Hydatidiform mole associated and imprinted (nonprotein coding)	NCRNA00020	6q24.2	Imprinted	Paternal	TATATATTGA		BC059359
44	PLAGL1	Pleiomorphic adenoma gene-like 1	ZAC, LOT1, ZAC1, MGC126275, MGC126276, DKFZp781P1017	6q24–q25	Imprinted	Paternal	ATCATAATGT	*	NM_001080951
45	SLC22A2	Solute carrier family 22 (organic cation transporter), member 2	OCT2, MGC32628	6q26	Imprinted	Maternal	AAAATTATAA		BC030978
46	SLC22A3	Solute carrier family 22 (extraneuronal monoamine transporter), member 3	EMT, EMTH, OCT3	6q26–q27	Imprinted	Maternal	TGCGCTAATC		AF078749
47	BRP44L	Brain protein 44-like	CGI-129, dJ68L15.3	6q27	Candidate	Paternal	CAGTGTATAT		BC000810
48	DDC	Dopa decarboxylase (aromatic L-amino acid decarboxylase)	AADC	7p12.2	Imprinted	Isoform Dependent	TGGCTAAATG		NM_000790
49	GRB10	Growth factor receptor-bound protein 10	RSS, IRBP, MEG1, GRB-IR, Grb-10, KIAA0207	7p12–p11.2	Imprinted	Isoform Dependent	TGCTTTGCTT		NM_001001549
50	GLI3	GLI family zinc finger 3	PHS, ACLS, GCPS, PAPA, PAPB, PAP-A, PAPA1, PPDIV	7p14.1	Candidate	Maternal	TAAATACATT	*	NM_000168
51	EVX1	Even-skipped homeobox 1		7p15.2	Candidate	Paternal	ACGCCCGTGG		NM_001989
52	HOXA5	Homeobox A5	HOX1C, HOX1.3, MGC9376	7p15.2	Candidate	Maternal	AGCCTGTTTA		BC013682
53	HOXA2	Homeobox A2	HOX1K	7p15.2	Candidate	Maternal	CATATTTTTT	*	NM_006735
54	HOXA3	Homeobox A3	HOX1E, MGC10155	7p15.2	Candidate	Maternal	CTCTTCCTCG	R	BC015180
55	HOXA11	Homeobox A11	HOX1I	7p15.2	Candidate	Maternal	GAGATAGCCC		BC040948
56	HOXA4	Homeobox A4	HOX1D	7p15.2	Candidate	Maternal	TGCTAAGAAT		NM_002141
57	TMEM60	Transmembrane protein 60	DC32, MGC74482, C7orf35	7q11.23	Candidate	Paternal	AATCTATCCT		NM_032936
58	PEG10	Paternally expressed 10	Edr, HB-1, Mar2, MEF3L, Mart2, RGAG3, KIAA1051	7q21	Imprinted	Paternal	GAAGTTATAA		NM_001040152
59	MAGI2	Membrane-associated guanylate kinase, WW and PDZ domain containing 2	AIP1, SSCAM, KIAA0705	7q21.11	Candidate	Maternal	TATTAATAGT		BC150277
60	PPP1R9A	Protein phosphatase 1, regulatory (inhibitor) subunit 9A	NRB1, NRBI, FLJ20068, KIAA1222, neurabin-I	7q21.3	Imprinted	Maternal	GAAGAGACAA		NM_017650
61	SGCE	Sarcoglycan, epsilon	ESG, DYT11	7q21–q22	Imprinted	Paternal	TTGGCAGTAT	*	NM_001099400
62	TFPI2	Tissue factor pathway inhibitor 2	PP5, REF1, TFPI-2, FLJ21164	7q22	Imprinted	Maternal	TGCTTTTAAC		NM_006528
63	MEST	Mesoderm-specific transcript homolog (mouse)	PEG1, MGC8703, MGC111102, DKFZp686L18234	7q32	Imprinted	Paternal	CTGAATGTAC		NM_002402
64	COPG2IT1	COPG2 imprinted transcript 1 (nonprotein coding)	CIT1, COPG2AS, FLJ41646, NCRNA00170, DKFZP761N09121	7q32	Imprinted	Paternal	GAGGGATGGC	*	AF038190
65	CPA4	Carboxypeptidase A4	CPA3	7q32	Imprinted	Maternal	TCTGTAAATC	*	BC052289
66	MESTIT1	MEST intronic transcript 1 (nonprotein coding)	PEG1-AS, NCRNA00040	7q32	Imprinted	Paternal	TGTAGTGGTG		NR_004382
67	KLF14	Kruppel-like factor 14	BTEB5	7q32.3	Imprinted	Maternal	TGGACTCTGG		NM_138693
68	SLC4A2	Solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1)	AE2, HKB3, BND3L, NBND3, EPB3L1	7q36.1	Candidate	Maternal	CCCCTCCCTC	*	NM_003040
69	FASTK	Fas-activated serine/threonine kinase	FAST	7q36.1	Candidate	Maternal	GGGGGTGGAT		NM_006712
70	PURG	Purine-rich element binding protein G	PURG-A, PURG-B, MGC119274	8p12	Candidate	Paternal	CTGAACAAAG		NM_001015508
71	DLGAP2	Discs, large (Drosophila) homolog-associated protein 2	DAP2, SAPAP2	8p23	Imprinted	Paternal	CCCCAGCCCC	*	NM_004745
72	Q8N9I4	FLJ37098 fis, clone BRACE2019004		8p23.1	Candidate	Paternal	CTAAGCGCAG		AK094417
73	FAM77D	Family with sequence similarity 77, member D	NKAIN3, FLJ39630	8q12.3	Candidate	Paternal	GTGCCCTACC		NM_173688
74	GPT	Glutamic-pyruvate transaminase (alanine aminotransferase)	GPT1, AAT1, ALT1	8q24.3	Candidate	Maternal	CCAAGTTCAC		NM_005309
75	KCNK9	Potassium channel, subfamily K, member 9	KT3.2, TASK3, K2p9.1, TASK-3, MGC138268, MGC138270	8q24.3	Imprinted	Maternal	CCAGGCACTC	*	AK090707
76	LY6D	Lymphocyte antigen 6 complex, locus D	E48	8q24.3	Candidate	Paternal	GAGATAAATG		BC031330
77	APBA1	Amyloid beta (A4) precursor protein-binding, family A, member 1	X11, D9S411E, MINT1, LIN10	9q21.11	Candidate	Paternal	TGTCTCCTTC		NM_001163
78	NM182505	Chromosome 9 open-reading frame 85	C9orf85, MGC61599, RP11-346E17.2	9q21.12	Candidate	Paternal	TAAAAATAAA		NM_182505
79	FAM75D1	Family with sequence similarity 75, member D1	FLJ46321	9q21.32	Candidate	Maternal	CCCCACAGGA		NM_001001670
80	ABCA1	ATP-binding cassette, subfamily A (ABC1), member 1	TGD, ABC1, CERP, ABC-1, HDLDT1, FLJ14958, MGC164864, MGC165011	9q31.1	Imprinted	Unknown	ATGGGGAGAG	*	AK024328
81	LMX1B	LIM homeobox transcription factor 1, beta	NPS1, LMX1.2, MGC138325, MGC142051	9q33.3	Candidate	Maternal	GGAGCCCAGC	*	NM_002316
82	EGFL7	EGF-like-domain, multiple 7	ZNEU1, MGC111117, VE-STATIN, RP11-251M1.2	9q34.3	Candidate	Paternal	GCACAGGCCA		NM_016215
83	PHPT1	Phosphohistidine phosphatase 1	PHP14, CGI-202, HSPC141, bA216L13.10, DKFZp564M173, RP11-216L13.10	9q34.3	Candidate	Maternal	GCCTATGGTC		NM_014172
84	NM144654	Chromosome 9 open-reading frame 116, transcript variant 2	C9orf116, FLJ13945, MGC29761, RP11-426A6.4	9q34.3	Candidate	Paternal	GGAAAGATGC		NM_144654
85	GATA3	GATA binding protein 3	HDR	10p14	Candidate	Paternal	AAGGATGCCA	*	BC003070
86	Q9H6Z8	FLJ21625 fis, clone COL08015		10q23.31	Candidate	Paternal	GCAGCAGCCT		AK025278
87	LDB1	LIM domain binding 1	CLIM2, NLI	10q24.32	Candidate	Maternal	TCCTGACCAC		NM_001113407
88	INPP5F V2	Inositol polyphosphate-5-phosphatase F	SAC2, hSAC2, MSTP007, MSTPO47, FLJ13081, KIAA0966, MGC59773, MGC131851	10q26.11	Imprinted	Paternal	AGATTGAGGC		NR_003252
89	C10orf93	Chromosome 10 open-reading frame 93	bB137A17.3, RP13-137A17.3	10q26.3	Candidate	Maternal	AACAAAATTA		BC044661
90	NKX6-2	NK6 homeobox 2	NK, NKX6B	10q26.3	Candidate	Maternal	ACCGAGAGCC	*	NM_177400
91	PAOX	Polyamine oxidase (exo-N4-amino)	PAO, DKFZp434J245	10q26.3	Candidate	Maternal	GAGACTCTGT		NM_152911
92	C10orf91	Chromosome 10 open-reading frame 91	bA432J24.4, RP11-432J24.4	10q26.3	Candidate	Maternal	GGTTCTCAGC		BC030794
93	VENTX2	VENT-like homeobox-2	NA88A, HPX42B, VENTX2	10q26.3	Candidate	Maternal	TGCTTTTAAA		AF068006
94	WT1-Alt trans	Wilms tumor 1	WT1, GUD, WAGR, WT33, WIT-2	11p13	Imprinted	Paternal	CTGGTATATG		BC032861
95	KCNQ1OT1	KCNQ1 overlapping transcript 1 (nonprotein coding)	LIT1, KvDMR1, KCNQ10T1, KvLQT1-AS, long QT intronic transcript 1	11p15	Imprinted	Paternal	AAATATTTAC		AF086011
96	KCNQ1DN	KCNQ1 downstream neighbor	BWRT, HSA404617	11p15.4	Imprinted	Maternal	GGACCCCAAA		AB039920
97	OSBPL5	Oxysterol binding protein-like 5	ORP5, OBPH1, FLJ42929	11p15.4	Imprinted	Maternal	GGGGATGGAT		NM_001144063
98	PKP3	Plakophilin 3		11p15.5	Candidate	Maternal	AACAGTCAAA		NM_007183
99	Q8N9U2	FLJ36520 fis, clone TRACH2002100		11p15.5	Candidate	Maternal	ACAAGTATTC		AK093839
100	IFITM1	Interferon-induced transmembrane protein 1 (9–27)	IFI17, LEU13, CD225	11p15.5	Candidate	Maternal	ACCATTGGAT		NM_003641
101	PHLDA2	Pleckstrin homology-like domain, family A, member 2	IPL, BRW1C, BWR1C, HLDA2, TSSC3	11p15.5	Imprinted	Maternal	AGCCCGCCGC		NM_003311
102	CDKN1C	Cyclin-dependent kinase inhibitor 1C (p57, Kip2)	BWS, WBS, p57, BWCR, KIP2	11p15.5	Imprinted	Maternal	CCCATCTAGC		NM_000076
103	SLC22A18	Solute carrier family 22, member 18	HET, ITM, BWR1A, IMPT1, TSSC5, ORCTL2, BWSCR1A, SLC22A1L, p45-BWR1A, DKFZp667A184	11p15.5	Imprinted	Maternal	CTGGGCCTCT	*	NM_002555
104	IGF2/INS	Insulin/insulin-like growth factor 2 (somatomedin A)	INSIGF, pp9974, C11orf43, FLJ22066, FLJ44734/ILPR, IRDN	11p15.5	Imprinted	Paternal	CTTGGGTTTT		BC011786
105	IGF2AS	Insulin-like growth factor 2 antisense	PEG8, MGC168198	11p15.5	Imprinted	Paternal	GAGGGCCGTT		AB030733
106	H19	H19, imprinted maternally expressed transcript (nonprotein coding)	ASM, BWS, ASM1, MGC4485, PRO2605, D11S813E	11p15.5	Imprinted	Maternal	GCCACCCCCT	*	BC007513
107	KCNQ1	Potassium voltage-gated channel, KQT-like subfamily, member 1	LQT, RWS, WRS, LQT1, SQT2, ATFB1, ATFB3, JLNS1, KCNA8, KCNA9, Kv1.9, Kv7.1, KVLQT1, FLJ26167	11p15.5	Imprinted	Maternal	GGCAGGAGAC		BC017074
108	B4GALNT4	Beta-1,4-N-acetyl-galactosaminyl transferase 4	FLJ25045	11p15.5	Candidate	Maternal	TGGAGCGTCC		NM_178537
109	RAB1B	RAB1B, member RAS oncogene family		11q13.2	Candidate	Maternal	TCAGGCATTT		BC071169
110	KBTBD3	Kelch repeat and BTB (POZ) domain containing 3	BKLHD3, FLJ30685	11q22.3	Candidate	Paternal	AAACTACAAA		AK092993
111	NTRI	Neurotrimin	NTM, HNT, IGLON2, MGC60329	11q25	Candidate	Paternal	TCCCTCTTCA	R	NM_016522
112	ABCC9	ATP-binding cassette, subfamily C (CFTR/MRP), member 9	SUR2, ABC37, CMD1O, FLJ36852	12p12.1	Candidate	Maternal	TGTCTTTAAA	*	BX537513
113	RBP5	Retinol binding protein 5, cellular	CRBP3, CRBPIII, CRBP-III	12p13.31	Imprinted	Maternal	CTTCCTGTTA	*	AK096947
114	HOXC4	Homeobox C4	HOX3E, CP19	12q13.13	Candidate	Maternal	GTACCTGCTG		NM_153633
115	HOXC9	Homeobox C9	HOX3B	12q13.13	Candidate	Maternal	TACGGCTCGC		BC032769
116	SLC26A10	Solute carrier family 26, member 10		12q13.3	Candidate	Maternal	ACCCTTGAAC		NM_133489
117	CDK4	Cyclin-dependent kinase 4	PSK-J3, CMM3	12q14.1	Candidate	Maternal	GAAGGAAGAA	*	BC005864
118	Q96AV8	E2F transcription factor 7	E2F7, FLJ12981	12q21.2	Candidate	Maternal	TAAACTGATT		BC016658
119	Q9HCM7	Fibrosin-1-like protein	FBRSL1, AUTS2L, KIAA1545, XTP9	12q24.33	Candidate	Maternal	TCAATCAGTG		NM_001142641
120	Q8N7V5	Proline-rich 20A	PRR20A, FLJ40296	13q21.1	Candidate	Maternal	ACTCACTGGA	*	NM_198441
121	FAM70B	Family with sequence similarity 70, member B		13q34	Candidate	Maternal	GTGCCTCTGT		NM_182614
122	FOXG1C	Forkhead box G1	HFK3	14q12	Candidate	Paternal	GAACTATATG		BC050072
123	PLEKHC1	Fermitin family (Drosophila) homolog 2	FERMT2, MIG2, UNC112, KIND2	14q22.1	Candidate	Paternal	GTTCAAAGAC		NM_001134999
124	DLK1	Delta-like 1 homolog (Drosophila)	DLK, FA1, ZOG, pG2, PREF1, Pref-1	14q32	Imprinted	Paternal	ATACAGAATA	*	BC013197
125	MEG3	Maternally expressed 3 (nonprotein coding)	GTL2, FP504, prebp1, PRO0518, PRO2160, FLJ31163, FLJ42589	14q32	Imprinted	Maternal	TGGGAAGTGG		AB032607
126	RTL1	Retrotransposon-like 1	PEG11	14q32.31	Candidate	Maternal	ACGGCCTGCA		NM_001134888
127	ATP10A	ATPase, class V, type 10A	ATPVA, ATPVC, ATP10C, KIAA0566	15q11.2	Imprinted	Maternal	GCCCCCAGAG		BC052251
128	PWCR1	Prader-Willi syndrome chromosome region 1	PET1, noncoding RNA in the Prader-Willi critical region	15q11.2	Imprinted	Paternal	TTGGTGAGGG		AF241255
129	NDN	Necdin homolog (mouse)	HsT16328	15q11.2–q12	Imprinted	Paternal	ACCTTGCTGG		BC008750
130	SNURF/; SNRPN	SNRPN upstream reading frame/small nuclear ribonucleoprotein polypeptide N	SMN, PWCR, SM-D, RT-LI, HCERN3, SNRNP-N, FLJ33569, FLJ36996, FLJ39265, MGC29886, SNURF-SNRPN, DKFZp762N022, DKFZp686C0927, DKFZp761I1912, DKFZp686M12165	15q11.2–q12	Imprinted	Paternal	CCGCCTCCGG		BC000611
131	MAGEL2	MAGE-like 2	nM15, NDNL1	15q11–q12	Imprinted	Paternal	TAGCATTGTA		BC035839
132	MKRN3	Makorin ring finger protein 3	D15S9, RNF63, ZFP127, ZNF127, MGC88288	15q11–q13	Imprinted	Paternal	AAATAATTTA		NM_005664
133	UBE3A	Ubiquitin protein ligase E3A	AS, ANCR, E6-AP, HPVE6A, EPVE6AP, FLJ26981	15q11–q13	Imprinted	Maternal	CTGTAAAACA		BC002582
134	Q9P168	PRO2369		15q13.1	Candidate	Paternal	AGAACTCCAC		AF119879
135	SOX8	SRY (sex-determining region Y)-box 8		16p13.3	Candidate	Paternal	CAGCGTCTCC		BC031797
136	SALL1	Sal-like 1 (Drosophila)	HSAL1	16q12.1	Candidate	Maternal	ACATTTCTAG	R	BC113881
137	C16orf57	Chromosome 16 open-reading frame 57		16q13	Candidate	Maternal	GGATTTTAAT		BC004415
138	ACD	Adrenocortical dysplasia homolog (mouse)	PTOP, PIP1, TINT1, TPP1	16q22.1	Candidate	Maternal	CGGCAAAAAA		BC016904
139	FOXF1	Forkhead box F1	FKHL5, FREAC1, ACDMPV	16q24.1	Candidate	Maternal	TTCCTCCTCT	*	BC089442
140	ANKRD11	Ankyrin repeat domain 11	T13, LZ16, ANCO-1	16q24.3	Imprinted	Maternal	AAAGCTGACA		BC058001
141	Q8N206	FLJ36443 fis, clone THYMU2012891	FLJ36443 fis	16q24.3	Candidate	Maternal	ACATTCAGAA		AK093762
142	TMEM88	Transmembrane protein 88	FLJ20025	17p13.1	Candidate	Maternal	CTGGGCTTCG		NM_203411
143	PYY2	Peptide YY, 2 (seminal plasmin)		17q11.2	Candidate	Paternal	TTCACTCCCG		AF222904
144	HOXB3	Homeobox B3	HOX2G	17q21.32	Candidate	Maternal	AACTCAGCTC		NM_002146
145	HOXB2	Homeobox B2	HOX2H	17q21.32	Candidate	Maternal	AAGCACAAGC		NM_002145
146	Q8N8L1	FLJ39287 fis, clone OCBBF2011897	LOC100131170	17q25.3	Candidate	Paternal	GGGTCTGAGG		AK096606
147	FAM59A	Family with sequence similarity 59, member A	GAREM, Gm944, C18orf11	18q12.1	Candidate	Paternal	TGCAGAGAAA		NM_022751
148	BRUNOL4	Bruno-like 4	CELF4	18q12.2	Candidate	Maternal	GCTGTTCTTG		NM_001025087
149	TCEB3C	Transcription elongation factor B polypeptide 3C (elongin A3)	HsT829, TCEB3L2, elongin A3	18q21.1	Imprinted	Maternal	ACCTCCCAGG	*	NM_145653
150	Q8NE65	Zinc finger protein 738	ZNF738	19p13.11	Candidate	Paternal	TTGGTCAGGC	R	BC034499
151	Q8NB05	FLJ34424 fis, clone HHDPC2008279		19p13.2	Candidate	Paternal	TGCTCGGGAA		AK091743
152	PPAP2C	Phosphatidic acid phosphatase type 2C	PAP2C, LPP2	19p13.3	Candidate	Maternal	GTGTTCTTGG		NM_003712
153	TSH3	Teashirt zinc finger homeobox 3	TSHZ3, ZNF537, FLJ54422, KIAA1474	19q12	Candidate	Paternal	TTCTTATTTT	*	AK291466
154	CHST8	Carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	GalNAc4ST1, GalNAc4ST	19q13.11	Candidate	Maternal	GTTTCCAGAG	*	NM_001127895
155	ZNF225	Zinc finger protein 225	MGC119735	19q13.31	Candidate	Paternal	TGGTATGTAT		NM_013362
156	ZNF229	Zinc finger protein 229	FLJ34222	19q13.31	Candidate	Maternal	TTGTAACCTC		NM_014518
157	ZNF264	Zinc finger protein 264	ZFP264	19q13.4	Imprinted	Maternal	GCTTCAGTGG		NM_003417
158	ZIM2/PEG3	ZIM2 zinc finger, imprinted 2/Paternally expressed 3	ZNF656/PW1, ZSCAN24, KIAA0287, DKFZp781A095	19q13.4	Imprinted	Paternal	TTTTCACCAT		BC037330
159	LILRB4	Leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4	LIR5, ILT3, HM18, CD85K	19q13.42	Candidate	Maternal	GGAAAATGGG	*	NM_001081438
160	ZNF550	Zinc finger protein 550		19q13.43	Candidate	Maternal	AGAAATGTAC	*	AK122867
161	CHMP2A	Chromatin-modifying protein 2A	VPS2A, VPS2, BC2	19q13.43	Candidate	Maternal	GGTGATGAGG	*	NM_014453
162	ZNF42	Zinc finger protein 42	MZF1, MZF1B, ZFP98, ZSCAN6	19q13.43	Candidate	Maternal	GTCAGAACAC	*	NM_003422
163	ISM1	Isthmin 1 homolog (zebrafish)	C20orf82	20p12.1	Candidate	Paternal	AATATTATCA		NM_080826
164	NNAT	Neuronatin	PEG5, MGC1439	20q11.2–q12	Imprinted	Paternal	CAGTTGTGGT		NM_005386
165	BLCAP	Bladder cancer-associated protein	BC10	20q11.2–q12	Imprinted	Isoform Dependent	CCTGTCCTTT		NM_006698
166	L3MBTL	L(3)mbt-like (Drosophila)	L3MBTL1, FLJ41181, KIAA0681, H-L(3)MBT, dJ138B7.3, DKFZp586P1522	20q13.12	Imprinted	Paternal	TGTGTATGTG	*	AB014581
167	GNAS	GNAS complex locus	AHO, GSA, GSP, POH, GPSA, NESP, GNAS1, PHP1A, PHP1B, C20orf45, MGC33735, dJ309F20.1.1, dJ806M20.3.3	20q13.3	Imprinted	Isoform Dependent	ATTAACAAAG		NM_000516
168	GNASAS	GNAS antisense RNA 1 (nonprotein coding)	SANG, NESPAS, GNAS1AS, NCRNA00075	20q13.32	Imprinted	Paternal	TCCATTAGAA		AJ251759
169	COL9A3	Collagen, type IX, alpha 3	IDD, MED, EDM3, FLJ90759, DJ885L7.4.1	20q13.33	Candidate	Maternal	AAGGAGCGGG	*	BC011705
170	C20orf20	Chromosome 20 open-reading frame 20	Eaf7, MRGBP, URCC4, MRG15BP, FLJ10914	20q13.33	Candidate	Maternal	ACCTCACTCT		BC009889
171	SIM2	Single-minded homolog 2 (Drosophila)	SIM, bHLHe15, MGC119447	21q22.13	Candidate	Paternal	AAGGAAGATT	*	NM_005069
172	DGCR6	DiGeorge syndrome critical region gene 6		22q11.21	Candidate	Paternal	CAGAAGAGGC	*	NM_005675
173	FLJ20464	Hypothetical protein FLJ20464		22q12.2	Candidate	Paternal	CGTGAAATTC		CR456348

SAGE tags annotated for NlaIII anchoring enzyme.
^aEntries are sorted according to the established gene location.
^b*: tag maps to other gene(s) according to CGAP (Cancer Genome Anatomy Project, NCI, NIH) SAGE Anatomic Viewer.
^c#: highly repetitive tag according to CGAP SAGE Anatomic Viewer.
^dR: unreliable/internal tag suggested by CGAP SAGE Anatomic Viewer is replaced with reliable 3′ end tag.