Review Article
Virtual Interactomics of Proteins from Biochemical Standpoint
Table 3
Examples of protein docking.
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ACD: available chemicals directory (database); CAPRI: critical assessment of predicted interactions; CLEP: combined lowest energy prediction; CS: combined scoring; DS-QM: docking score-based quantitative matrices; EQS score: score combining grid energy, electrostatic and entropy terms; FMO: fragment molecular orbitals; HLA-DP: a subset of human MHC II; : free energy of binding; PK: protein kinases; MM-GB/SA molecular mechanics scoring function with generalized Born implicit solvent effects; P-gp: P-glycoprotein; RMSD: root mean square displacement statistics; TCR: T-cell receptor. |