Identification and Quantification of Genomic Repeats and Sample Contamination in Assemblies of 454 Pyrosequencing Reads

<table><i>Correlation between read depth and abundance as determined by real-time PCR</i>. Scatter plots of CP values obtained with real-time PCR, versus the logarithm of the local read depth of the region of the PCR primers. (a) <i>P. rubescens</i> assembly (b) <i>A. flos-aquae</i> assembly. Linear regression curves are shown with the regression result in the inset.</table>

Sequencing

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Figure 3

Figure 3: Identification and Quantification of Genomic Repeats and Sample Contamination in Assemblies of 454 Pyrosequencing Reads 