Testing the Coding Potential of Conserved Short Genomic Sequences

Table 1

The above tables in UCSC's genome database are used to analyze the coding potential regions detected from the human sequences in the axtTight folder in UCSC's genome database.

Tracks	URL
RefSeq [17, 18]	http://www.ncbi.nih.gov/Refseq/
Known genes [19]
TWINSCAN [4]
GENSCAN [1]
SGP [20]	http://nemo.imim.es/grib/
ENSEMBL	http://www.ensembl.org/
GENEID [21]	http://www1.imim.es/software/geneid/index.html
AUGUSTUS [22]
ECgene [23]	http://genome.ewha.ac.kr/ECgene/
MGC [24]
AceView [25]	http://www.ncbi.nih.gov/IEB/Research/Acembly/index.html
CCDS [18, 26]
Nonhuman RefSeq [24]
Retropose [27]
Yale Psuedo [28]	http://www.pseudogene.org/
Vega	http://vega.sanger.ac.uk/
Vega pseudogenes	http://vega.sanger.ac.uk/
UniGene [29]