Research Article
Designing Efficient Spaced Seeds for SOLiD Read Mapping
Table 5
Comparison of 4 different seed families on the E. coli dataset.
| | Seed family | Mapped reads | Unique mapping positions | Execution time |
| | PerM-F3-S20 | 731,447 (73.14%) | 662,666 (66.27%) | 0m33s | | SHRiMP-default | 772,861 (77.29%) | 696,903 (69.69%) | 1m02s | | 3-lossy-12 | 773,155 (77.32%) | 697,164 (69.72%) | 0m57s | | 3-lossless-10-24p | 772,336 (77.23%) | 696,615 (69.66%) | 0m44s |
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