Research Article

Direct Detection and Identification of Enteroviruses from Faeces of Healthy Nigerian Children Using a Cell-Culture Independent RT-Seminested PCR Assay

Table 2

Enterovirus genotyping tool (EGT) identification of isolates and graphic view of the region of the enterovirus genome represented by the query nucleotide sequence(s). This graphic view was generated by the enterovirus genotyping tool [28]. (a) shows CVA20 sequences while (b) shows E32. Column 1 shows the sequence ID (or accession number); column 2 shows the number of nucleotide sequences; column 3 shows the species to which the isolate belongs; column 4 shows the serotype of the isolates; column 5 shows a hyperlink (report) to more information on the alignment generated by the software (note: the hyperlink is generated afresh for every sequence data imputed into the enterovirus genotyping tool and is a temporary link that ceases to exist not long after a guest leaves the EGT); and column 6 shows a graphic view of the region of the enterovirus genome represented by the query sequence.
(a) CVA20

Name Length Genus/speciesSerotype, subgenogroupReport Genome

DQ358078.1∣CVA20_serotype_CAV27444Enterovirus CCVA20Report

KF303091.1∣CVA20_NIG_2012660Enterovirus CCVA20Report

NIE2014_CV-A20_EV-C354Enterovirus CCVA20Report

JX426682.1∣CVA20_T08-213305Enterovirus CCVA20Report

JX426681.1∣CVA20_T08-166303Enterovirus CCVA20Report

JX426680.1∣CVA20_T08-112303Enterovirus CCVA20Report

JX426679.1∣CVA20_MAR-252303Enterovirus CCVA20Report

JX426678.1∣CVA20_MAR-250305Enterovirus CCVA20Report

JX426677.1∣CVA20_MAR-249305Enterovirus CCVA20Report

(b) E32

Name Length Genus/speciesSerotype, subgenogroupReport Genome

JQ411108.1∣E32_D614_M54-2009259Enterovirus BE32Report

AF295475.1∣E32_50_99568Enterovirus BE32Report

AF295518.1∣E32_PR_10568Enterovirus BE32Report

HQ662326.1∣E32_Mum-829337Enterovirus BE32Report

HQ662323.1∣E32_Mum-837337Enterovirus BE32Report

JN203970.1∣E32_N-990B372Enterovirus BE32Report

JN203969.1∣E32_N-900375Enterovirus BE32Report

JN203968.1∣E32_N-737876Enterovirus BE32Report