The Study of Viral RNA Diversity in Bird Samples Using De Novo Designed Multiplex Genus-Specific Primer Panels

Table 1

Viral families and genera covered by the primer panel and control samples of viral RNA used.

Primer set	Family	Genus	Control sample RNA	Acronym
1	Filoviridae	Ebolavirus	Zaire ebolavirus	ZEBOV
2		Marburgvirus	Marburg virus	MARV
3		Cuevavirus	N/A
4	Arenoviridae	Mammarenavirus	Lassa virus	LASV
5	Rhabdoviridae	Lyssavirus	Rabies virus	RABV
6		Ledantevirus	N/A
7	Coronaviridae	Alphacoronavirus	N/A
8		Betacoronavirus	Middle East respiratory syndrome coronavirus	MERS CoV
9		Gammacoronavirus	N/A
10	Reoviridae	Orbivirus	Kemerovo virus	KEMV
11		Orthoreovirus	N/A
12		Seadornavirus	N/A
13	Paramyxoviridae	Henipavirus	N/A
14	Phenuiviridae	Phlebovirus	Uukuniemi virus N/A
15	Hantaviridae	Hantavirus	Dobrava virus	DOBV
16	Nairoviridae	Orthonairovirus	Crimean-Congo virus hemorrhagic fever virus, Paramushir virus	CCHFV, PRMV
17	Peribunyaviridae	Orthobunyavirus	Inkoo virus	INKV
18	Orthomyxoviridae	Thogotovirus	N/A
19	Picornaviridae	Cardiovirus	N/A
20		Parechovirus	N/A
21	Flaviviridae	Flavivirus	Tick-borne encephalitis virus, Yellow fever virus, Japanese encephalitis virus	TBEV, YFV, JEV
22	Togaviridae	Alphavirus	N/A