|
| Subgenotype | Strain Identity | Year of isolation | Cleavage site | Location |
|
| VIg | JQ039385.1 dove/Nigeria/VRD07-163/2007 | 2007 | RRQKRF | Kano |
| JQ039389.1 pigeon/Nigeria/VRD07-369/2007 | 2007 | KRQKRF | Jigawa |
|
| VIh | HG326601.1 pigeon/Nigeria/NIE07-061/2007 | 2007 | RRKKRF | Oyo |
| HG326602.1 pigeon/Nigeria/NIE07-062/2007 | 2007 | RRKKRF | Oyo |
| HG326603.1 pigeon/Nigeria/NIE07-063/2007 | 2007 | RRKKRF | Oyo |
| HG326604.1 pigeon/Nigeria/NIE09-1898/2009 | 2009 | RRKKRF | Lagos |
| HG424627.1 pigeon/Nigeria/NIE13-092/2013 | 2013 | RRRKRF | Oyo |
| HG424628.1 pigeon/Nigeria/NIE13-093/2013 | 2013 | RRRKRF | Oyo |
| JQ039387.1 Nigeria/VRD08-37BRpe(7-9)/2008 | 2008 | RRRKRF | Jigawa |
| JQ039388.1 Nigeria/VRD08-37(10-11-13)/2008 | 2007 | RRRKRF | Jigawa |
| JQ039391.1 Nigeria/VRD07-231/2007 | 2007 | RRRKRF | Jigawa |
|
| VIi | HG424625.1 pigeon/Nigeria/NIE13-005/2013 | 2013 | RRQKRF | Oyo |
| HG424626.1 pigeon/Nigeria/NIE13-008/2013 | 2013 | RRQKRF | Oyo |
|
| XIVa | HF969131.1 chicken/Nigeria/NIE08-2117/2009 | 2009 | RRQKRF | Sokoto |
| HF969136.1 chicken/Nigeria/NIE08-2194/2009 | 2009 | RRQKRF | Sokoto |
| HF969139.1 chicken/Nigeria/NIE08-2280/2009 | 2009 | RRQKRF | Sokoto |
| HF969144.1 chicken/Nigeria/NIE09-2009/2009 | 2009 | RRQKRF | Yobe |
| HF969150.1 chicken/Nigeria/NIE09-2044/2009 | 2009 | RRQKRF | Yobe |
| HF969153.1 chicken/Nigeria/NIE09-2079/2009 | 2009 | RRQKRF | Yobe |
| HF969155.1 chicken/Nigeria/NIE09-2087/2009 | 2009 | RRQKRF | Yobe |
| HF969167.1 turkey/Nigeria/NIE10-082/2011 | 2011 | RRQKRF | Sokoto |
| HF969186.1 chicken/Nigeria/NIE07-125/2007 | 2007 | RRQKRF | Lagos |
| HF969193.1 chicken/Nigeria/NIE08-2150/2009 | 2009 | RRQKRF | Sokoto |
| HF969200.1 chicken/Nigeria/NIE08-2362/2009 | 2009 | RRQKRF | Sokoto |
| HF969205.1 turkey/Nigeria/NIE09-2071/2009 | 2009 | RRQKRF | Yobe |
| HF969206.1 chicken/Nigeria/NIE09-2101/2009 | 2009 | RRQKRF | Yobe |
| JQ039386.1 VRD08-36/2008 | 2008 | RRQKRF | Taraba |
| HF969158.1 avian/Nigeria/NIE09-2168/2009 | 2009 | RRQKRF | Yobe |
|
| XIVb | HF969133.1 chicken/Nigeria/NIE08-2159/2009 | 2009 | RRRKRF | Sokoto |
| HF969141.1 chicken/Nigeria/NIE08-2359/2009 | 2009 | RRRKRF | Sokoto |
| HF969142.1 chicken/Nigeria/NIE09-1596/2009 | 2009 | RRQKRF | Benue |
| HF969143.1 chicken/Nigeria/NIE09-1597/2009 | 2009 | RRQKRF | Benue |
| HF969145.1 chicken/Nigeria/NIE09-2014/2009 | 2009 | RRRKRF | Yobe |
| HF969146.1 chicken/Nigeria/NIE09-2017/2009 | 2009 | RRRKRF | Yobe |
| HF969149.1 chicken/Nigeria/NIE09-2041/2009 | 2009 | RRRKRF | Yobe |
| HF969151.1 chicken/Nigeria/NIE09-2053/2009 | 2009 | RRRKRF | Yobe |
| HF969157.1 chicken/Nigeria/NIE09-2166/2009 | 2009 | RRRKRF | Yobe |
| HF969161.1 chicken/Nigeria/NIE10-024/2011 | 2011 | RRRKRF | Sokoto |
| HF969162.1 chicken/Nigeria/NIE10-032/2011 | 2011 | RRRKRF | Sokoto |
| HF969163.1 chicken/Nigeria/NIE10-034/2011 | 2011 | RRQKRF | Sokoto |
| HF969164.1 chicken/Nigeria/NIE10-041/2011 | 2011 | RRRKRF | Sokoto |
| HF969165.1 chicken/Nigeria/NIE10-043/2011 | 2011 | RRRKRF | Sokoto |
| HF969166.1 chicken/Nigeria/NIE10-076/2011 | 2011 | RRRKRF | Sokoto |
| HF969169.1 chicken/Nigeria/NIE10-150/2011 | 2011 | RRRKRF | Sokoto |
| HF969170.1 chicken/Nigeria/NIE10-160/2011 | 2011 | RRRKRF | Sokoto |
| HF969172.1 chicken/Nigeria/NIE10-258/2011 | 2011 | RRQKRF | Sokoto |
| HF969173.1 chicken/Nigeria/NIE10-302/2011 | 2011 | RRRKRF | Sokoto |
| HF969177.1 chicken/Nigeria/NIE10-409/2011 | 2011 | RRRKRF | Sokoto |
| HF969178.1 chicken/Nigeria/NIE08-2270/2009 | 2009 | RRRKRF | Sokoto |
| HF969187.1 chicken/Nigeria/NIE08-0453/2008 | 2008 | RRRKRF | Yobe |
| HF969190.1 chicken/Nigeria/NIE08-2032/2009 | 2009 | RRRKRF | Sokoto |
| HF969198.1 chicken/Nigeria/NIE08-2279/2009 | 2009 | RRRKRF | Yobe |
| HF969201.1 chicken/Nigeria/NIE09-1599/2009 | 2009 | RRQKRF | Benue |
| HF969202.1 chicken/Nigeria/NIE09-2013/2009 | 2009 | RRRKRF | Yobe |
| HF969203.1 turkey/Nigeria/NIE09-2021/2009 | 2009 | RRRKRF | Yobe |
| HF969208.1 chicken/Nigeria/NIE10-122/2011 | 2011 | RRRKRF | Sokoto |
| HF969210.1 chicken/Nigeria/NIE10-139/2011 | 2011 | RRQKRF | Sokoto |
| HF969211.1 chicken/Nigeria/NIE10-263/2011 | 2011 | RRRKRF | Sokoto |
| HF969212.1 chicken/Nigeria/NIE10-318/2011 | 2011 | RRRKRF | Sokoto |
| HF969213.1 chicken/Nigeria/NIE10-325/2011 | 2011 | RRQKRF | Sokoto |
| HF969214.1 chicken/Nigeria/NIE10-333/2011 | 2011 | RRRKRF | Sokoto |
| JQ039390.1 chicken/Nigeria/VRD07-233/2007 | 2007 | RRRKRF | - |
| KC568205.1 NG-705/KD.TW.7C | 2009 | RRQKRF | Kaduna |
| KC568206.1 NG-706/JG.KZ.14T | 2009 | RRRKRF | Jigawa |
| KC568209.1 NG-720/KD.TW.03T | 2009 | RRQKRF | Kaduna |
| KT948996.1 duck/Nigeria/NG-695/KG.LOM.11-16/2009 | 2009 | RRRKRF | Kogi |
| KY171989.1 chicken/Nigeria/VRD10/143/N68/913/2010 | 2010 | RRRKRF | - |
| KY171990.1 chicken/Nigeria/KD/TW/03T/N45/720/2009 | 2009 | RRQKRF | Kaduna |
| KY171993.1 chicken/Nigeria/VRD09/031/N23/715/2009 | 2009 | RRRKRF | - |
| KY171994.1 chicken/Nigeria/VRD09/001/N19/714/2009 | 2009 | RRRKRF | - |
|
| Unassigned | KC568207.1 NG-707/GM.GMM.17-18T | 2009 | RRRKRF | Gombe |
| KU058680.1 duck/Nigeria/903/KUDU-113/1992 | 1992 | RRQKRF | - |
|
| XVIIa | FJ772449.1 avian-913-33-Nigeria-2006 | 2006 | RRQKRF | - |
| FJ772486.1 avian-3724-6-Nigeria-2008 | 2008 | RRQKRF | - |
| HF969129.1 chicken/Nigeria/NIE08-1363/2008 | 2008 | RRQKRF | Plateau |
| HF969130.1 guinea fowl/Nigeria/NIE08-2004/2009 | 2009 | RRQKRF | Sokoto |
| HF969132.1 chicken/Nigeria/NIE08-2149/2009 | 2009 | RRQKRF | Sokoto |
| HF969134.1 chicken/Nigeria/NIE08-2168/2009 | 2009 | RRQKRF | Sokoto |
| HF969135.1 chicken/Nigeria/NIE08-2187/2009 | 2009 | RRQKRF | Sokoto |
| HF969137.1 chicken/Nigeria/NIE08-2208/2009 | 2009 | RRQKRF | Sokoto |
| HF969138.1 chicken/Nigeria/NIE08-2224/2009 | 2009 | RRQKRF | Sokoto |
| HF969140.1 chicken/Nigeria/NIE08-2340/2009 | 2009 | RRQKRF | Sokoto |
| HF969147.1 chicken/Nigeria/NIE09-2031/2009 | 2009 | RRQKRF | Yobe |
| HF969148.1 chicken/Nigeria/NIE09-2034/2009 | 2009 | RRQKRF | Yobe |
| HF969152.1 chicken/Nigeria/NIE09-2072/2009 | 2009 | RRQKRF | Yobe |
| HF969154.1 chicken/Nigeria/NIE09-2083/2009 | 2009 | RRQKRF | Yobe |
| HF969156.1 chicken/Nigeria/NIE09-2128/2009 | 2009 | RRQKRF | Yobe |
| HF969168.1 chicken/Nigeria/NIE10-124/2011 | 2011 | RRRKRF | Sokoto |
| HF969174.1 chicken/Nigeria/NIE10-304/2011 | 2011 | RRRKRF | Sokoto |
| HF969175.1 chicken/Nigeria/NIE10-306/2011 | 2011 | RRRKRF | Sokoto |
| HF969176.1 chicken/Nigeria/NIE10-310/2011 | 2011 | RRRKRF | Sokoto |
| HF969188.1 chicken/Nigeria/NIE08-1365/2008 | 2008 | RRQKRF | Plateau |
| HF969189.1 chicken/Nigeria/NIE08-1366/2008 | 2008 | RRQKRF | Plateau |
| HF969191.1 chicken/Nigeria/NIE08-2042/2009 | 2009 | RRQKRF | Sokoto |
| HF969192.1 chicken/Nigeria/NIE08-2119/2009 | 2009 | RRQKRF | Sokoto |
| HF969195.1 chicken/Nigeria/NIE08-2247/2009 | 2009 | RRQKRF | Sokoto |
| HF969197.1 chicken/Nigeria/NIE08-2267/2009 | 2009 | RRQKRF | Sokoto |
| HF969199.1 chicken/Nigeria/NIE08-2349/2009 | 2009 | RRQKRF | Sokoto |
| HF969204.1 chicken/Nigeria/NIE09-2028/2009 | 2009 | RRQKRF | Yobe |
| HF969207.1 avian/Nigeria/NIE09-2167/2009 | 2009 | RRQKRF | Yobe |
| HF969209.1 chicken/Nigeria/NIE10-123/2011 | 2011 | RRRKRF | Sokoto |
| HF969215.1 chicken/Nigeria/NIE10-335/2011 | 2011 | RRRKRF | Sokoto |
| JQ039392.1 avian/Nigeria/VRD07-733/2007 | 2007 | RRQKRF | - |
| JQ039393.1 chicken/Nigeria/VRD07-141/2007 | 2007 | RRQKRF | Sokoto |
| JQ039394.1 chicken/Nigeria/VRD07-410/2007 | 2007 | RRQKRF | Jigawa |
| KC568204.1 pigeon/Nigeria/ZM/KN/PG01/N1/688/2009 | 2009 | RRQKRF | Zamfara |
| KC568208.1 NG-710/GM.PLBM.10-12T | 2009 | RRQKRF | Gombe |
| KY171991.1 Nigeria/VRD17/04/N2/861/2004 | 2004 | RRQKRF | - |
| KY171992.1 chicken/Nigeria/JN/469/N44/892/2009 | 2009 | RRQKRF | Plateau |
| KY171995.1 chicken/Nigeria/VRD124/06/N11/867/2006 | 2006 | RRQKRF | - |
|
| XVIIb | FJ772446.1 avian-913-1-Nigeria-2006 | 2006 | RRQKRF | - |
| HF969128.1 avian/Nigeria/NIE07-216/2007 | 2007 | RRQKRF | - |
| HF969171.1 chicken/Nigeria/NIE10-182/2011 | 2011 | RRQKRF | Sokoto |
| HF969194.1 chicken/Nigeria/NIE08-2199/2009 | 2009 | RRQKRF | Sokoto |
| HF969196.1 chicken/Nigeria/NIE08-2261/2009 | 2009 | RRQKRF | Sokoto |
| KF442614.1 Nigeria/228-7/2006 | 2006 | RRQRRF | - |
|
| XVIIIb | HF969216.1 chicken/Nigeria/NIE11-1286/2011 | 2011 | RRQKRF | Oyo |
| HF969217.1 chicken/Nigeria/NIE10-171/2011 | 2011 | RRQKRF | Sokoto |
|
| Class I | HG326605.1 Spur-winged goose/Nigeria/ NIE-08-0121/2008 | 2008 | GKQGRL | Yobe |
| HG326606.1 Spur-winged goose/Nigeria/ NIE-08-0121/2008 | 2008 | GKQGRL | Yobe |
| HG326607.1 Spur-winged goose/Nigeria/ NIE-08-0121/2008 | 2008 | GKQGRL | Yobe |
| HG326608.1 Spur-winged goose/Nigeria/ NIE-08-0121/2008 | 2008 | GKQGRL | Yobe |
|
