BioMed Research International

BioMed Research International / 2005 / Article
Special Issue

Data Mining in Genomics and Proteomics

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Research article | Open Access

Volume 2005 |Article ID 594674 | https://doi.org/10.1155/JBB.2005.96

Maliackal Poulo Joy, Amy Brock, Donald E. Ingber, Sui Huang, "High-Betweenness Proteins in the Yeast Protein Interaction Network", BioMed Research International, vol. 2005, Article ID 594674, 8 pages, 2005. https://doi.org/10.1155/JBB.2005.96

High-Betweenness Proteins in the Yeast Protein Interaction Network

Received01 Jun 2004
Accepted13 Aug 2004

Abstract

Structural features found in biomolecular networks that are absent in random networks produced by simple algorithms can provide insight into the function and evolution of cell regulatory networks. Here we analyze “betweenness” of network nodes, a graph theoretical centrality measure, in the yeast protein interaction network. Proteins that have high betweenness, but low connectivity (degree), were found to be abundant in the yeast proteome. This finding is not explained by algorithms proposed to explain the scale-free property of protein interaction networks, where low-connectivity proteins also have low betweenness. These data suggest the existence of some modular organization of the network, and that the high-betweenness, low-connectivity proteins may act as important links between these modules. We found that proteins with high betweenness are more likely to be essential and that evolutionary age of proteins is positively correlated with betweenness. By comparing different models of genome evolution that generate scale-free networks, we show that rewiring of interactions via mutation is an important factor in the production of such proteins. The evolutionary and functional significance of these observations are discussed.

Copyright © 2005 Hindawi Publishing Corporation. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.


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