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BioMed Research International

BioMed Research International / 2010 / Article / Tab 1

Research Article

Computational Method for Estimating DNA Copy Numbers in Normal Samples, Cancer Cell Lines, and Solid Tumors Using Array Comparative Genomic Hybridization

Table 1

Median signal intensities calculated using parameters generated in this paper.
Cell lineMedian signalComment
PC30.36Homozygous deletion of PTEN
Data for 28 male cell lines provided by Affymetrix1.14Single copy of X chromosome outside of pseudoautosomal regions
NA046262.7247,XXX
NA01416E3.4148,XXXX
NA060614.149,XXXXX
HTB275.31CN estimated by qPCR for CCND1 is 6 . 5 ± 1 . 1
CRL16205.79CN estimated by qPCR for EGFR is 8 . 6 ± 1 . 4
CCL2516.41CN estimated by qPCR for CCND1 is 1 0 . 6 ± 4 . 4
HTB258.22CN estimated by qPCR for CCND1 is 1 3 . 8 ± 1 . 4
CRL23388.82CN estimated by qPCR for CCND1 is 1 6 . 6 ± 0 . 7
HTB279.42CN estimated by qPCR for ERBB2 is 1 8 . 6 ± 2 . 7
CRL19787.95CN estimated by qPCR for CCND1 is 1 9 . 6 ± 6 . 5
HTB2311.26CN estimated by qPCR for CCND1 is 2 0 . 6 ± 2 . 6
HTB1910.13CN estimated by qPCR for EGFR is 2 0 . 8 ± 2 . 8
HTB12713.93CN estimated by qPCR for CCND1 is 2 6 . 1 ± 5 . 5
CRL232114.13CN estimated by qPCR for CCND1 is 2 6 . 6 ± 5 . 7
HTB4113.25CN estimated by qPCR for CCND1 is 4 6 . 9 ± 7 . 1
HTB12817.92CN estimated by qPCR for CCND1 is 5 4 . 4 ± 1 4 . 7
HTB12721.34CN estimated by qPCR for ERBB2 is 5 6 . 5 ± 3 . 9

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