Microarray Detection Call Methodology as a Means to Identify and Compare Transcripts Expressed within Syncytial Cells from Soybean (Glycine max) Roots Undergoing Resistant and Susceptible Reactions to the Soybean Cyst Nematode (Heterodera glycines)

Table 2

Select genes that were unique to the 3 dpi syncytia undergoing a compatible reaction but that were not differentially expressed as compared to a pericycle control sample (Figure 8(d)) comprising the Disease and Defense, Signaling, and Transcription categories.

2 C-3 dpi
Probe set ID	Public ID	Avg 𝑃-value	Gene
Disease & defense
Gma.3749.1.S1_at	CD392491	0.002923594	heat shock protein 70 precursor
GmaAffx.90134.1.S1_s_at	CF805859	0.008396837	purple acid phosphatase-like protein
GmaAffx.78614.1.S1_at	BQ611991	0.008396837	Suppressor-of-White-APricot/surp domain-containing protein
Gma.13217.1.S1_at	CD391191	0.011756578	wound-responsive protein-related
GmaAffx.11893.1.A1_at	CD414188	0.01212639	regulator of chromatin condensation-1 (RCC1)
GmaAffx.91519.1.S1_s_at	CF807244	0.013412317	double-stranded DNA-binding family protein
GmaAffx.29692.1.S1_at	AW348396	0.016772715	chitinase (class II)
GmaAffx.71331.1.S1_at	AW597101	0.018428453	galactosyltransferase family protein
Gma.6640.1.S1_at	BQ628278	0.022040082	haem peroxidase
Gma.8022.1.S1_at	BQ628998	0.024040827	epoxide hydrolase
GmaAffx.24201.1.S1_at	BQ740972	0.025685834	Avr9 elicitor response like protein
Gma.9638.1.A1_at	CA936403	0.029056963	ADR6
Signal transduction
Gma.3893.1.S1_at	U44850.1	0.002298236	Guanine nucleotide-binding protein subunit beta-like protein (ArcA)
Gma.3286.1.S1_at	BQ298747	0.003021268	putative presenilin
GmaAffx.33721.1.S1_at	BI967195	0.003317825	calcium/calmodulin-dependent protein kinase (CDPK)
Gma.17655.1.S1_at	BE057259	0.003317825	protein phosphatase 2A (PP2A)
Gma.10697.2.S1_at	AW424151	0.003591192	BRI1-associated receptor kinase 1
Gma.10649.1.S1_at	BE659256	0.004034485	BRI1-associated receptor kinase 1
Gma.1965.1.S1_x_at	L01432.1	0.00603523	calmodulin (SCaM-3)
GmaAffx.52826.3.S1_at	BF596503	0.00846925	protein phpsphatase 2C (PP2C)
Gma.7517.1.S1_at	BU548272	0.009290923	U box-containing protein kinase
GmaAffx.50980.1.S1_s_at	BE823095	0.010694912	protein phpsphatase 2C (PP2C)
GmaAffx.57055.1.S1_at	AW203411	0.015413718	mitogen-activated protein kinase
Gma.16954.2.A1_at	BE822903	0.017813909	phospholipase C
GmaAffx.85565.1.S1_at	BE611082	0.018428453	calcium-dependent protein kinase 29 (CDPK)
Gma.7177.2.A1_a_at	BI425372	0.018428453	MHK kinase
GmaAffx.35805.2.S1_at	BF324178	0.019563038	MAP3K delta-1 protein kinase-like
Gma.9902.1.A1_at	AW395328	0.019678474	FUSCA 5 MAP kinase kinase (FUS5)
Gma.2314.1.S1_at	AW310385	0.019678474	FUS3-COMPLEMENTING GENE 1
GmaAffx.21787.1.A1_at	AW348555	0.020429855	CLAVATA1 receptor kinase (CLV1)
GmaAffx.69025.1.S1_at	BM271195	0.020753499	RIO kinase
GmaAffx.62926.1.S1_at	BE804949	0.020828644	G-protein alpha subunit
Gma.11015.1.S1_at	CD398110	0.023684433	leucine-rich repeat transmembrane protein
Gma.3185.2.S1_at	BM890715	0.023684433	leucine-rich repeat transmembrane protein
GmaAffx.15664.1.S1_at	BE607642	0.024040827	LRR receptor-like protein kinase
GmaAffx.77602.1.S1_at	BQ627622	0.025399823	protein phosphatase-2c (PP2C)
Gma.5722.1.S1_at	BU546228	0.029056963	Ste20-related protein kinase
Gma.8364.1.S1_at	BE659226	0.034312943	putative protein kinase (PK12)
Transcription
Gma.4165.1.S1_at	BI969143	0.005201937	homeodomain-related
Gma.4205.1.S1_at	AF464906.1	0.005679433	repressor protein
GmaAffx.50673.1.S1_at	BF425742	0.005679433	No apical meristem (NAM) protein
GmaAffx.67609.1.S1_at	BG551013	0.007110254	SAR DNA-binding protein-1
Gma.16172.1.S1_at	CD411627	0.009049965	CONSTANS-like B-box zinc finger
GmaAffx.52855.1.S1_at	AW308923	0.010397582	transcription initiation factor IIE (TFIIE)
Gma.3176.1.S1_a_at	BU549115	0.010649919	transcription factor IIA (TFIIA)
Gma.2702.2.S1_at	AI855587	0.010649919	no apical meristem (NAM)
Gma.8298.1.S1_at	CD392694	0.012696314	trithorax 4-nuclear SET-domain containing protein
Gma.4116.2.S1_at	BM177935	0.014076915	transcription initiation factor IIE, beta subunit (TFIiE beta)
GmaAffx.85579.1.S1_at	BQ273352	0.014307059	lipoamide dehydrogenase
GmaAffx.81234.1.A1_at	BE823765	0.014307059	TRF-LIKE 8 (TRFL8)
GmaAffx.66085.1.S1_at	BQ630399	0.015096504	Basic Helix-Loop-Helix (bHLH)
Gma.13174.1.S1_s_at	CD414686	0.016772715	indoleacetic acid-induced protein 1 (IAA13)
GmaAffx.71523.1.S1_at	BU544012	0.01738237	phospatase 2A inhibitor (NAP1-RELATED PROTEIN 1 [NRP1])
GmaAffx.92212.1.A1_s_at	CF807937	0.018428453	MYB transcription factor (MYB92)
Gma.7891.1.S1_at	AW310625	0.020753499	Basic Helix-Loop-Helix (bHLH)
Gma.3632.1.A1_at	BI316950	0.020828644	zinc finger protein
Gma.17664.1.S1_at	AW348917	0.020828644	zinc finger (DHHC type) family protein
Gma.2243.2.S1_s_at	BE807162	0.022028694	transcription initiation factor IIF beta (TFIIF beta)
Gma.1270.1.S1_at	CD405147	0.022830045	LIM domain-containing, zinc-binding protein
Gma.752.1.A1_at	AW432463	0.022830045	Helix-loop-helix DNA-binding
Gma.5274.1.S1_at	BM178426	0.025399823	transcription factor EIL2
Gma.7776.1.A1_at	CD399260	0.025685834	ATBRM/CHR2
GmaAffx.52970.1.S1_at	BU548330	0.027055562	zinc finger (DHHC type) family protein
Gma.7212.1.S1_at	BE658102	0.027055562	Zinc finger, BED-type predicted
GmaAffx.91768.1.S1_s_at	CF807493	0.031457154	WRKY27
Gma.14100.1.S1_at	CD408988	0.034312943	zinc finger, RING-type
GmaAffx.11131.1.A1_at	CD395293	0.037684072	CCR4 associated factor 1-related protein
Gma.4281.1.S1_at	AW156348	0.037684072	WRKY