Methodology Report
Development of a Novel Bioinformatics Tool for In Silico Validation of Protein Interactions
Table 2
Example of a center of bond enlargement. The columns show the amino acid one-letter code, the residues coordinates, the status of proximity with respect to the pattern chain in the complex, the status of hydropathy (1 hydrophobic, 0 hydrophilic) and the secondary structure (H = alpha chain; L = loop) of every amino acid around a center of bond. The center of bond is represented by the amino acids within the bold lines (i.e., S and N); the grey-highlighted rows are the results of the symmetrical enlargement due to hydropathy, while the amino acid reported in italic (V) are grouped because of its proximity to the opposite chain.
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