BioMed Research International / 2010 / Article / Tab 1 / Research Article
Correctness of Protein Identifications of Bacillus subtilis Proteome with the Indication on Potential False Positive Peptides Supported by Predictions of Their Retention Times Table 1 Model peptides used to derive QSRR model.
Peptide sequence Protein m/z Missed cleavages Charge
š
c
o
r
r
l
o
g
S
u
m
(
š
+
1
)
A
A
clog P
š”
š
e
x
p
ALKALPMHIR 1 575.73 1 2 3.06 1.3542
ā
1
.
7
4
25.12 LFTFHADICTLPDTEKQIK 3 1111.28 1 2 3.21 1.6674
ā
4
.
6
32.60 KIKVYLPR 4 509.15 2 2 2.27 1.3005
ā
0
.
9
5
24.06 LVNEVTEFAK 6 575.65 0 2 3.42 1.3540
ā
2
.
4
4
24.53 YTRKVPQVSTPTLVEVSR 1 1031.19 2 2 3.01 1.4758
ā
5
.
6
7
25.80 ALHVTNIK 8 896.07 0 1 2.48 1.2148
ā
3
.
1
4
19.69 DTHKSEIAHR 3 597.64 1 2 2.8 1.1246
ā
7
.
7
7
13.15 AAFTECCQAADK 6 687.7 0 2 3.07 1.2657
ā
5
.
6
9
19.31 ALPGEQQPLHALTR 8 766.37 0 2 3.37 1.4145
ā
5
.
2
2
24.36 VKEAMAPK 5 874.08 1 1 2.13 1.0165
ā
2
.
1
9
14.40 QHMDSSTSAASSSNYCNQMMK 7 789.84 0 3 4.75 1.4546
ā
1
1
.
8
20.46 AFDEKLFTFHADICTLPDTEK 3 814.91 1 3 5.11 1.7127
ā
4
.
5
1
34.45 HIIVACEGNPYVPVHFDASV 7 1113.73 0 2 5.15 1.6128
ā
3
.
5
1
32.15 VHTECCHGDLLECADDRADLAK 6 1295.34 1 2 4.47 1.5447
ā
9
.
9
5
24.98 AFDEKLFTFHADICTLPDTEKQIK 3 1406.60 2 2 4.42 1.7629
ā
4
.
9
5
34.77 DLGEENFK 6 952 0 1 2.09 1.2654
ā
4
.
4
8
19.46 CCAAADPHECYAK 6 778.79 0 2 3.46 1.2195
ā
5
.
7
7
16.98 IPGSPEIR 8 869.00 0 1 2.18 1.1657
ā
2
.
4
3
19.40 LKPDPNTLCDEFKADEKKFWGKYLYEIAR 1 1174.00 5 3 4.49 1.8691
ā
5
.
4
5
39.20 ALHVTNIKK 8 1024.24 1 1 2.01 1.2405
ā
4
.
6
4
18.27 VLPVPQKAVPYPQR 5 796.96 1 2 3.32 1.3948
ā
3
.
2
4
24.20 AEFAEVSK 6 880.97 0 1 2.10 1.1909
ā
2
.
9
4
18.06 ALHVTNIKK 8 512.62 1 2 2.70 1.2405
ā
4
.
6
4
18.24 TCVADESAENCDK 6 751.23 0 2 4.05 1.1488
ā
7
.
2
3
15.32 NECFLQHK 6 1077.16 0 1 2.33 1.2654
ā
3
.
7
4
19.67 TCVADESHAGCEK 3 675.73 0 2 3.47 1.1488
ā
7
.
7
6
14.99 CASIQKFGER 3 570.16 1 2 2.78 1.2958
ā
4
.
6
6
19.81 VHTECCHGDLLECADDR 6 1046.05 0 2 6.23 1.4161
ā
8
.
4
2
22.86 LFTFHADICTLPDTEK 3 926.55 0 2 4.79 1.6039
ā
3
.
2
5
32.90 RIPGSPEIR 8 513.09 1 2 2.63 1.1944
ā
3
.
5
20.00 HLVDEPQNLIK 3 653.75 0 2 3.48 1.3690
ā
4
.
6
8
24.56 TCVADESHAGCEKSLHTLFGDELCK 3 1348.00 1 2 3.77 1.6483
ā
7
.
3
7
31.14 YPNCAYK 7 916.99 0 1 2.58 1.1508
ā
2
.
3
4
16.78 LRCASIQKFGER 1 704.83 2 2 3.82 1.4107
ā
4
.
9
6
22.79 WKEPCRIELYR 8 747.38 2 2 2.70 1.4991
ā
3
.
5
2
26.67 TPEVDDEALEKFDK 1 818.87 1 2 5.09 1.4067
ā
6
.
1
2
24.94 LDELRDEGK 6 538.08 1 2 2.52 1.2299
ā
5
.
3
4
16.62 YICDNQDTISSKLK 1 814.91 1 2 3.80 1.4504
ā
6
.
1
22.75 YICDNQDTISSKLK 3 814.91 1 2 4.03 1.4504
ā
6
.
1
22.75 QTALVELLKHKPK 3 753.42 2 2 2.89 1.4159
ā
3
.
0
8
27.89 VKEAMAPKHK 5 570.20 2 2 2.90 1.0930
ā
3
.
4
1
13.48 ELINSWVESQTNGIIR 4 930.53 0 2 3.93 1.6097
ā
5
.
8
6
31.95 ISQAVHAAHAEINEAGR 4 887.96 0 2 3.19 1.3932
ā
7
.
5
6
19.51 YICDNQDTISSK 3 694.25 0 2 3.8 1.3468
ā
6
.
6
1
18.79 SHCIAEVEKDAIPENLPPLTADFAEDKDVCK 1 1133.93 2 3 5.65 1.7342
ā
3
.
5
3
33.13 GGLEPINFQTAADQAR 4 844.91 0 2 4.19 1.4735
ā
6
.
7
1
27.41 EAMAPKHKEMPFPK 5 821.49 2 2 3.87 1.3625
ā
3
.
3
1
21.52 FYLPNCNKNGFYHSR 8 931.04 0 2 2.76 1.5912
ā
5
.
8
3
26.57 YICENQDSISSK 6 723.25 0 2 4.04 1.3468
ā
6
.
7
7
18.06 SLHTLFGDELCK 3 682.28 0 2 3.55 1.4829
ā
3
.
3
2
30.69
