BioMed Research International / 2010 / Article / Tab 2

Research Article

Correctness of Protein Identifications of Bacillus subtilis Proteome with the Indication on Potential False Positive Peptides Supported by Predictions of Their Retention Times

Table 2

Test peptides obtained from a set of model proteins and used to check the validity of the proposed QSRR model.

Peptide sequenceProteinm/zMissed cleavagesCharge 𝑋 c o r r l o g S u m ( π‘˜ + 1 ) A A clog P 𝑑 𝑅 e x p 𝑑 𝑅 p r e d Dt R

WKEPCR8818.97111.501.1950 βˆ’ 2 . 5 2 17.3219.001.69
VVESLAK8745.89011.521.1192 βˆ’ 2 . 1 1 16.4216.880.46
VLPVPQK5780.98011.571.1192 βˆ’ 1 . 3 0 19.1917.491.70
IELYR8693.81011.571.2011 βˆ’ 0 . 6 7 20.9020.610.29
LDELR6645.73011.621.1133 βˆ’ 2 . 4 8 17.0616.400.66
RIPGSPEIR81025.19111.681.1944 βˆ’ 3 . 5 0 19.9718.241.74
NGFYHSR8880.93011.721.2308 βˆ’ 3 . 9 8 16.0619.042.99
SLGKVGTR3817.96111.791.1164 βˆ’ 4 . 2 9 15.5415.130.41
AQETSGEEISK81179.22011.831.1560 βˆ’ 7 . 5 3 13.3213.940.62
NVACK7592.65011.900.7843 βˆ’ 3 . 0 4 8.385.392.99
ETCFAEEGKK6600.63122.001.2158 βˆ’ 5 . 1 8 16.5817.651.07
CCAADDKEACFAVEGPKLVVSTQTALA11371.57222.011.6500 βˆ’ 6 . 3 1 32.4430.761.68
FYLPNCNK8500.08022.021.3425 βˆ’ 2 . 3 4 24.3123.880.43
HLKTEAEMK2544.14122.121.1551 βˆ’ 4 . 2 1 16.0916.430.34
HKEMPFPK5507.61122.251.1970 βˆ’ 0 . 8 2 20.2720.360.09
ALKAWSVAR3501.60122.281.3755 βˆ’ 2 . 6 5 23.3124.711.40
LFTFHADICTLPDTEKQIKK1783.91232.571.6767 βˆ’ 4 . 8 6 31.6532.721.07
TPEVDDEALEKFDKALK1650.38232.581.5119 βˆ’ 4 . 0 6 29.4628.031.43
LYAEERYPILPEYLQCVKELYR4930.74232.591.7534 βˆ’ 3 . 6 6 39.1836.103.08
LFTFHADICTLPDTEKQIKKQTALVELLK11115.98333.221.8423 βˆ’ 5 . 6 5 37.1337.450.32
LKECCDKPLLEK1710.37224.321.3797 βˆ’ 3 . 1 2 21.9424.492.55

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