Functional Group ORF Gene Gene Product Log2 Number Name (3G10R/PW) Intermediary Metabolism Energy metabolism, carbon—Aerobic respiration Xf 0308nuo DNADH-ubiquinone oxidoreductase, NQO4 subunit
−
0
.
9
3
Xf 0310nuo FNADH-ubiquinone oxidoreductase, NQO1 subunit
−
1
.
0
8
Xf 0311nuo GNADH-ubiquinone oxidoreductase, NQO3 subunit
−
1
.
1
4
Xf 0317nuo MNADH-ubiquinone oxidoreductase, NQO13 subunit
−
1
.
0
3
Xf 0347dld 1D-Lactate dehydrogenase
1
.
1
8
Energy metabolism, carbon—Glycolysis Xf 0303tpi A OR tpi Triosephosphate isomerase
−
0
.
8
9
Energy metabolism, carbon—TCA cycle Xf 2548suc DSuccinyl-CoA synthetase, alpha subunit
−
1
.
6
7
Xf 1554fum CFumarate hydratase
−
1
.
4
7
Xf 1554fum CFumarate hydratase
−
1
.
3
6
Energy metabolism, carbon—Electron Transport Xf 1990yne NThioredoxin
−
1
.
1
4
Xf 0620dsb Dc-Type cytochrome biogenesis protein (Copper Tolerance)
−
0
.
8
3
Degradation—Degradation of Small Molecules Xf 1250roc FArginine deaminase
−
2
.
0
0
Xf 1740yli IGlucose dehydrogenase B
1
.
4
5
Xf 2395axe AAcetylxylan esterase
1
.
7
5
Xf 2432gta BUTP-glucose-1-phosphate uridylyl transferase
−
1
.
1
4
Xf 0610gal EUDP-glucose 4-epimerase
−
1
.
4
4
Xf 2210Dioxygenase
1
.
0
0
Regulatory Functions Xf 1354yyb ATranscriptional regulator (MARR Family)
1
.
2
7
Xf 1354yyb ATranscriptional regulator (MARR Family)
1
.
5
5
Xf 1254ara LTranscriptional regulator (ARAC Family)
−
1
.
1
0
Xf 2344fur Transcriptional regulator (FUR Family)
1
.
1
9
Xf 2336col RTwo-component system regulatory protein
1
.
3
2
Xf 2534col RTwo-component system regulatory protein
−
0
.
9
5
Xf 1752Transcriptional regulator (LYSR Family)
1
.
6
4
Xf 1733AF0343 Tryptophan repressor binding protein
1
.
1
3
Xf 1749opd ETranscriptional regulator
1
.
6
5
Xf 1730yaf CTranscriptional regulator (LYSR Family)
1
.
9
7
Sugar-Nucleotide Biosynthesis, Conversions Xf 0260xan APhosphoglucomutase/ Phosphomannomutase
0
.
9
2
Central Intermediary Metabolism—Pool, Multipourpose Conversions Xf 0880yad FCarbonic anhydrase
−
1
.
3
0
Xf 2255acs Acetyl coenzyme A synthetase
−
1
.
3
7
Central Intermediary Metabolism—Amino Sugars Xf 2355Exo II n-acetyl-beta-glucosaminidase
1
.
4
4
Biosynthesis of Small Molecules Amino Acids Biosynthesis—Aspartate family, pyruvate family Xf 2272met E5-methyltetrahydro pteroyltriglutamate–homocysteine methyltransferase
1
.
4
4
Xf 1121met F OR AQ_ 14295,10-methylene tetrahydrofolate reductase
0
.
9
2
Xf 2223thr CThreonine synthase
1
.
0
0
Xf 0863met 2Homoserine O-acetyltransferase
1
.
2
5
Amino Acids Biosynthesis—Aromatic Amino Acid Family Xf 0624aro EShikimate 5-dehydrogenase
1
.
6
4
Nucleotides Biosynthesis—Salvage of Nucleosides and Nucleotides Xf 2150apa HDiadenosine tetraphosphatase
1
.
1
4
Xf 2354hpt Hypoxanthine-guanine phosphoribosyl transferase
1
.
0
8
Nucleotides Biosynthesis –
2
Deoxyribonucleotides Xf 0580PH1695 Thymidylate kinase
−
0
.
9
3
Xf 1196nrd A OR TP1008Ribonucleoside-diphosphate reductase alpha chain
1
.
1
0
Nucleotides Biosynthesis—Purine Ribonucleotides Xf 1503gmk OR spo RGuanylate kinase
0
.
8
6
Nucleotides Biosynthesis—Pyrimidine Ribonucleotides Xf 1107car B OR pyr ACarbamoyl-phosphate synthase large chain
−
0
.
9
9
Xf 1106car ACarbamoyl-phosphate synthase small chain
−
0
.
9
6
Cofactors, Prosthetic Groups, Carriers Biosynthesis—Menaquinone, Ubiquinone Xf 1487ubi EUbiquinone menaquinone transferase
−
1
.
6
4
Cofactors, Prosthetic Groups, Carriers Biosynthesis—Pantothenate Xf 0229pan B3-Methyl-2-oxobutanoate hydroxy methyltransferase
−
1
.
5
0
Cofactors, Prosthetic Groups, Carriers Biosynthesis—Thiamin Xf 0783thi GThiamine biosynthesis protein
−
0
.
8
7
Cofactors, Prosthetic Groups, Carriers Biosynthesis—Riboflavin Xf 1748MJ0671 5-amino-6-(5-phospho ribosylamino) uracil reductase
1
.
0
5
Cofactors, Prosthetic Groups, Carriers Biosynthesis—Biotin Xf 2477bio DDethiobiotin synthetase
1
.
0
8
Cofactors, Prosthetic Groups, Carriers Biosynthesis—Others Xf 1916AF1671 Coenzime F390 synthetase
1
.
2
1
Fatty Acid and Phosphatidic Acid Biosynthesis Xf 2269DRB0080 3-alpha-hydroxysteroid dehydrogenase
−
0
.
9
3
Xf 0572fab ABeta-hydroxydecanoyl-ACP dehydratase
1
.
1
8
Macromolecule Metabolism DNA metabolism—Replication Xf 0001dna AChromosomal replication initiator
−
1
.
0
2
Xf 0002dna NDNA polymerase III, beta chain
−
1
.
3
9
Xf 0002dna NDNA polymerase III, beta chain
−
1
.
1
5
Xf a0003top A OR sup XTopoisomerase I
−
1
.
6
0
Xf 1353par CTopoisomerase subunit
0
.
9
8
DNA metabolism—Recombination Xf 0425rec DExodeoxyribonuclease V alpha chain
−
0
.
9
6
Xf 0425rec DExodeoxyribonuclease V alpha chain
−
1
.
0
2
Xf 0423ecb OR ror AExodeoxyribonuclease V beta chain
1
.
3
0
DNA metabolism—Repair Xf 1902ruv B OR HL0312Holliday junction binding protein, DNA helicase
−
1
.
2
0
Xf 2692ung Uracil-DNA glycosylase
−
1
.
1
8
DNA Metabolism—Restriction, Modification Xf 0935LLAIIA Methyltransferase
−
0
.
8
3
Xf 1804SPHIM Site-specific DNA-methyltransferase
1
.
1
2
Xf 1774hpa IIMDNA methyltransferase
−
0
.
8
1
DNA Metabolism—Structural DNA Binding Proteins Xf 0446bbh 3DNA-binding protein
−
1
.
1
9
Xf 1644ssb Single-stranded DNA binding protein
1
.
0
5
RNA Metabolism—Ribosomes—Maturation and Modification Xf 0441rim IRibosomal-protein-alanine acetyl transferase
1
.
8
7
Xf 0939rlu D OR sfh BRidosomal large subunit pseudoeridine synthase D
−
1
.
0
2
RNA Metabolism—Ribosomal Proteins Xf 1164rpl E OR rpl5 OR HI079050S ribosomal protein L5
−
0
.
9
1
Xf 0238rps O OR sec C30S ribosomal protein S15
−
1
.
2
3
Xf 1166rps H OR rps 8 OR HI079230S ribosomal protein S8
−
1
.
4
Xf 1169rps E OR spc 30S ribosomal protein S5
−
1
.
1
4
RNA Metabolism—RNA Synthesis, Modification, DNA Transcription Xf 1108gre ATranscriptional elongation factor
−
1
.
7
3
Xf 0227pcn BPolynucleotide adenyltransferase
−
1
.
3
1
Xf 2632rpo C OR tab BRNA polymerase beta subunit
1
.
0
9
Xf 2606rlu CPseudourylate synthase
−
1
.
0
8
RNA Metabolism—Aminoacyl tRNA Synthetases, tRNA Modification Xf 0428TM0492 Tryptophanyl-tRNA synthetase
−
1
.
8
9
Xf 0445pro S OR drp AProlyl-tRNA synthetase
−
1
.
0
8
Xf 0134val S OR HI1391Valyl-tRNA synthetase
−
0
.
9
6
Xf 0169tyr S OR HI1610Tyrosyl-tRNA synthetase
1
.
9
3
Xf 1314que AS-Adenosylmethionine tRNA ribosyltransferase-isomerase
−
1
.
0
0
Xf 0736thr SThreonyl-tRNA synthetase
−
1
.
0
8
RNA Metabolism—RNA Degradation Xf 1505rph Ribonuclease PH
−
0
.
7
4
Xf 1041rnh BRibonuclease HII
−
1
.
0
0
Xf 2615rna SA3Ribonuclease
1
.
0
0
Protein Metabolism—Translation and Modification Xf 0644mip Peptidyl-propyl cis-trans isomerase
−
1
.
1
1
Xf 2629fus AElongation factor G
−
0
.
9
0
Protein Metabolism—Protein Degradation Xf 0220pep QProline dipeptidase
−
1
.
1
3
Xf 0453hfl C OR HI0150Integral membrane proteinase
1
.
6
5
Xf 2241muc DPeriplasmic protease
−
0
.
8
7
Xf 1479ptr B OR tlp Peptidase
−
0
.
8
2
Xf 2330slp DProteinase
−
0
.
8
5
Cell Structure Murein Sacculus, Peptidoglycan Xf 0416vac JLipoprotein precursor
−
0
.
7
8
Xf 0799ddl B OR ddl D-Alanine-D-alanine ligase B
−
1
.
6
9
Xf 0276mpl UDP-N-acetylmuramate- L-alanine ligase
−
0
.
8
8
Surface Structures Xf 0487Fimbrillin
1
.
0
7
Xf 2539Fimbrial protein
−
1
.
0
2
Xf 2544pil BPilus biogenesis protein
−
0
.
7
9
Chemotaxis and Mobility—Surface Polysaccharides, Lipopolysaccharides and Antigens Xf 1289kds A2-dehydro-3-deoxy phosphooctonate aldolase
−
0
.
9
0
Xf 1419lpx D OR fir A OR oms AAcetyltransferase
1
.
0
5
Xf 1646lpx D OR fir AUDP-3-O-(R-3-hydroxy myristoyl)-glucosamine N-acyltransferase
−
0
.
7
5
Xf 1638Dolichyl-phosphate mannose synthase related protein
−
1
.
0
2
Xf 0879rfb ULipopolysaccharide biosynthesis protein
−
0
.
7
4
Xf 2154ops XSaccharide biosynthesis regulatory protein
−
1
.
0
0
Xf 0105kdt A OR waa A3-deoxy-D-manno-octulosonic acid trasnferase
1
.
5
0
Membrane Components—Outer Membrane Constituents Xf 1024Outer membrane protein H.8 precursor
−
1
.
1
9
Cellular Processes Transport—Cations Xf 1903kup OR trk DPotassium uptake protein
1
.
0
1
Xf 1903kup OR trk DPotassium uptake protein
1
.
4
0
Xf 0599ybi LTONB-dependent receptor for iron transport
1
.
4
6
Xf 0395bfr Bacterioferritin
−
1
.
2
2
Transport—Amino Acids, Amines Xf 1937glt PProton glutamate symport protein
−
1
.
0
0
Transport—Protein, Peptide Secretion Xf 2685spp AProtease IV
−
0
.
8
8
Xf 2261HI0561 560 Oligopeptide transporter
−
1
.
1
2
Transport—Carbohydrates, Organic Acids, Alchohols Xf 0976dct AC4-dicarboxylate transport protein
−
1
.
1
0
Cell Division Xf 2281DR0012 Chromosomepartitioning protein
−
1
.
0
8
Other Xf 2251ppa Solute Na+ symporter
−
1
.
6
4
Xf 1728F451 Transport protein
1
.
1
1
Xf 1604btu EABC transporter vitamin B12 uptake permease
−
1
.
4
8
Xf 1409HI1148 ABC transporter ATP-binding protein
0
.
8
4
Mobile Genetic Elements Transposon- and Intron-Related Functions Xf 1775IS629 Reverse transcriptase
1
.
0
6
Xf 0535Transposase ORFA
−
0
.
8
0
Phage-Related Functions and Prophages Xf 2522Phage-related protein
1
.
5
2
Xf 2522Phage-related protein
1
.
0
2
Xf a0040trb IConjugal transfer protein
−
0
.
9
8
Xf 2291Phage-related protein
0
.
9
5
Xf 0513lyc VPhage-related endolysin
−
1
.
5
2
Xf 1786Phage-related protein
1
.
3
2
Xf 1706GP37 Phage-related tail fiber protein
1
.
3
1
Xf 0685Phage-related protein
0
.
8
6
Xf 0704Phage-related protein
1
.
1
8
Xf 1875Phage-related protein
1
.
4
4
Plasmid-Related Functions Xf a0006tra A OR vir B3Conjugal transfer protein
−
1
.
1
3
Xf a0013tra AO OR vir B9Conjugal transfer protein
−
1
.
3
7
Xf a0008tra AC OR vir B5Conjugal transfer protein
−
1
.
5
4
Pathogenicity,Virulence, and Adaptation Toxin production and detoxification Xf 0262cva CColicin V precursor
7
.
2
9
Xf 0263cva CColicin V precursor
1
.
7
0
Xf 1011frp CHemolysin-type calcium binding protein
−
1
.
4
5
Xf 1827ohr Organic hydroperoxide resistance protein
−
1
.
4
3
Xf 2614sod A OR sodSuperoxide dismutase (MN)
−
1
.
4
7
Xf 1210gst OR HI0111Glutathione S-transferase
−
1
.
0
0
Xf 1890gpo Glutathione peroxidase-like protein
0
.
8
6
Xf 2135frn EPolyketide synthase (PKS)
1
.
8
0
Xf 1897tol BTOLB protein precursor
−
1
.
3
0
Xf 1729DR1890 Phenylacetaldehyde dehydrogenase
0
.
9
1
Host Cell Wall Degradation Xf 0818eng XCAEndo-1,4-beta-glucanase
−
0
.
8
9
Adaptation Atypical Condition Xf 2682mdo GPeriplasmic glucan biosynthesis protein
−
0
.
8
0
Xf 2622tap BTemperature acclimation protein B
−
1
.
3
0
Surface Proteins Xf 1516usp A1Surface-exposed outer membrane protein
−
1
.
2
8
Exopolysaccharydes Xf 2360gum MGumm protein
−
1
.
0
8
Other Xf 1529hsf Surface protein
1
.
9
6
Xf 1532oxy ROxidative stress transcriptional regulator
0
.
9
6
Xf 2121vap EVirulence-associated protein E
1
.
2
4
Xf 1987vac BVACB protein
−
1
.
3
5
Xf 1114rpf CRegulator of pathogenicity factors
−
0
.
8
7
ORFs with Undefined Category Xf 1723yrp GSugar-phosphate dehydrogenase
1
.
3
0
Xf 0088hfl XGTP-binding protein
1
.
3
6
Hypothetical Proteins Xf 1287Hypothetical protein
1
.
4
0
Xf 0493Hypothetical protein
0
.
9
4
Xf 0037Hypothetical protein
−
1
.
1
1
Xf 1655Hypothetical protein
0
.
8
2
Xf 0726Hypothetical protein
−
1
.
1
7
Xf 1835Hypothetical protein
−
0
.
8
5
Xf a0031Hypothetical protein
−
1
.
6
0
Xf 2413Hypothetical protein
0
.
9
6
Xf 0871Hypothetical protein
1
.
6
9
Xf 2454Hypothetical protein
−
0
.
9
7
Xf 1769Hypothetical protein
−
0
.
8
0
Xf 1803Hypothetical protein
−
2
.
0
0
Xf 0512Hypothetical protein
−
0
.
9
3
Xf 0531Hypothetical protein
−
1
.
7
2
Xf 1868Hypothetical protein
1
.
1
1
Xf 1881Hypothetical protein
1
.
1
8
Xf 0917Hypothetical protein
1
.
2
5
Xf 1738Hypothetical protein
1
.
3
7
Xf 0242Hypothetical protein
1
.
2
7
Xf 1228Hypothetical protein
1
.
0
1
Xf 1279Hypothetical protein
1
.
1
1
Xf 1575Hypothetical protein
1
.
1
4
Xf 2597Hypothetical protein
−
0
.
9
4
Xf 0516Hypothetical protein
1
.
1
6
Xf 2017Hypothetical protein
−
1
.
5
1
Xf 1989Hypothetical protein
−
0
.
9
4
Xf 2410Hypothetical protein
−
1
.
6
0
Xf 2304Hypothetical protein
−
1
.
2
6
Xf 0959Hypothetical protein
1
.
2
4
Xf 2115Hypothetical protein
1
.
2
3
Xf 1100Hypothetical protein
1
.
0
4
Xf 1704Hypothetical protein
0
.
9
5
Xf 0974Hypothetical protein
−
1
.
2
6
Xf 0491Hypothetical protein
1
.
3
1
Xf 1060Hypothetical protein
1
.
7
7
Xf 2151Hypothetical protein
1
.
7
3
Xf 2449Hypothetical protein
−
1
.
0
1
Xf 2305Hypothetical protein
−
0
.
7
7
Xf 1721Hypothetical protein
1
.
1
4
Xf 0626Hypothetical protein
−
1
.
3
9
Xf 2411Hypothetical protein
1
.
0
1
Xf 1770Hypothetical protein
−
0
.
8
7
Xf 1364Hypothetical protein
−
0
.
8
5
Xf 1710Hypothetical protein
0
.
9
0
Xf 1761Hypothetical protein
1
.
4
4
Xf 1787Hypothetical protein
1
.
3
8
Xf 0540Hypothetical protein
−
1
.
3
0
Xf 1788Hypothetical protein
1
.
0
6
Xf 0646Hypothetical protein
1
.
0
3
Xf 2543Hypothetical protein
−
0
.
9
8
Xf 0914Hypothetical protein
−
1
.
3
3
Xf 2702Hypothetical protein
−
1
.
5
2
Xf 0492Hypothetical protein
1
.
5
5
Xf 1239Hypothetical protein
1
.
0
1
Xf 0074Hypothetical protein
−
1
.
0
7
Xf a0004Hypothetical protein
−
1
.
7
8
Xf 1687Hypothetical protein
1
.
3
2
Xf 0388Hypothetical protein
−
0
.
8
6
Xf 0025Hypothetical protein
−
1
.
2
3
Xf 1434Hypothetical protein
−
1
.
2
4
Xf 2125Hypothetical protein
0
.
8
9
Xf 1513Hypothetical protein
1
.
1
8
Xf 2711Hypothetical protein
1
.
2
3
Xf 0035Hypothetical protein
1
.
3
1
Xf 1441Hypothetical protein
−
1
.
4
1
Xf 2514Hypothetical protein
1
.
7
1
Xf 2626Hypothetical protein
1
.
4
4
Xf 0687Hypothetical protein
1
.
0
7
Xf 1917Hypothetical protein
1
.
9
0
Xf 2271Hypothetical protein
1
.
5
0
Xf 1036Hypothetical protein
−
0
.
9
9
Xf a0017Hypothetical protein
−
1
.
9
8
Xf 0529Hypothetical protein
1
.
0
9
Xf 2103Hypothetical protein
−
1
.
0
5
Xf 1986Hypothetical protein
−
1
.
0
5
Xf 1700Hypothetical protein
1
.
1
2
Xf 1719Hypothetical protein
1
.
0
8
Xf 1753Hypothetical protein
1
.
4
4
Xf 0019Hypothetical protein
0
.
8
5
Xf 0293Hypothetical protein
−
1
.
1
5
Xf 0300Hypothetical protein
1
.
6
7
Xf 0279Hypothetical protein
1
.
7
9
Xf 0735Hypothetical protein
−
0
.
9
4
Xf 1010Hypothetical protein
−
0
.
9
7
Xf 1580Hypothetical protein
0
.
8
0
Xf 2021Hypothetical protein
1
.
2
1
Xf 2738Hypothetical protein
1
.
4
9
Xf 0877Hypothetical protein
1
.
2
8
Xf 2270Hypothetical protein
1
.
1
3
Xf 0488Hypothetical protein
1
.
5
0
Xf 0264Hypothetical protein
4
.
1
0
Xf 2701Hypothetical protein
−
1
.
6
8
Xf 2768Hypothetical protein
1
.
3
5
Xf 0688Hypothetical protein
0
.
9
6
Xf 0898Hypothetical protein
1
.
1
5
Xf 0426Hypothetical protein
−
1
.
2
3
Xf 0443Hypothetical protein
−
1
.
0
6
Xf 1421Hypothetical protein
−
1
.
4
0
Xf 2193Hypothetical protein
−
2
.
1
7
Xf 2390Hypothetical protein
1
.
2
4
Xf 1128Hypothetical protein
−
1
.
1
6
Xf 2116Hypothetical protein
1
.
5
2
Xf 0467Hypothetical protein
−
1
.
1
8
Xf 1193Hypothetical protein
−
0
.
8
0
Xf 1032Hypothetical protein
−
1
.
3
3
Xf 2262Hypothetical protein
−
1
.
6
0
Conserved Hypothetical Proteins Xf a0045Conserved hypothetical protein
−
2
.
2
2
Xf 2450Conserved hypothetical protein
−
1
.
2
2
Xf 2609Conserved hypothetical protein
−
0
.
8
7
Xf 1754Conserved hypothetical protein
1
.
8
3
Xf 0805Conserved hypothetical protein
−
0
.
8
1
Xf 2493Conserved hypothetical protein
1
.
1
3
Xf 2088Conserved hypothetical protein
1
.
2
6
Xf 0196Conserved hypothetical protein
−
1
.
9
5
Xf 1750Conserved hypothetical protein
1
.
3
6
Xf 1745Conserved hypothetical protein
1
.
2
4
Xf 2647Conserved hypothetical protein
1
.
1
3
Xf 2252Conserved hypothetical protein
−
2
.
8
1
Xf 2010Conserved hypothetical protein
−
1
.
0
6
Xf 2237Conserved hypothetical protein
−
0
.
8
5
Xf a0032SCJ21.16 Conserved hypothetical protein
−
1
.
0
6
Xf 0758yje EConserved hypothetical protein
−
1
.
4
0
Xf 0407ycc WConserved hypothetical protein
0
.
9
8
Xf 0552yra LConserved hypothetical protein
−
0
.
9
2
Xf 2651ycb YConserved hypothetical protein
−
1
.
1
9
Xf 2575DR0386 Conserved hypothetical protein
−
0
.
8
6
Xf 0363yia DConserved hypothetical protein
−
1
.
7
8
Xf 0066ylb KConserved hypothetical protein
1
.
1
0
Xf 2179ybe NConserved hypothetical protein
1
.
2
9
Xf 2153HI0260.1 Conserved hypothetical protein
−
1
.
1
4
Xf 0553HI1655 Conserved hypothetical protein
−
1
.
2
9
Xf 2014DR0566 Conserved hypothetical protein
1
.
1
4
Xf 0139yjg PConserved hypothetical protein
1
.
1
5
Xf 2474yje KConserved hypothetical protein
−
0
.
7
9
Xf 2096MTH1196 Conserved hypothetical protein
−
1
.
9
3
Xf 1054TM1087 Conserved hypothetical protein
−
0
.
9
1
Xf 0554yra NConserved hypothetical protein
−
0
.
8
5
Xf 0339btu B OR bfe OR cer Conserved hypothetical protein
−
0
.
9
1
Xf 1272RV1827 OR MTCY1A11.16C Conserved hypothetical protein
−
1
.
0
2
Xf 1405yhb JConserved hypothetical protein
−
0
.
8
8
Xf 1808yba BConserved hypothetical protein
−
1
.
1
9
Xf 1829RP471 Conserved hypothetical protein
−
1
.
0
5
Xf 0941yux KConserved hypothetical protein
−
0
.
8
0