BioMed Research International / 2010 / Article / Tab 1

Research Article

Multiple-Locus Variable-Number Tandem Repeat Analysis of Vibrio cholerae in Comparison with Pulsed Field Gel Electrophoresis and Virulotyping

Table 1

Characteristics of V. cholerae VNTR loci.

CharacterPrimers sequenceSize range of PCR products (bp)VNTR position (kb)AllelesD index

VCTR 1F: 5 -GAGAAAAGCCAAACCACTGC- 3 212–23013790.82
R: 5 -TTTAAGCGCGCAAAGAAACT- 3
VCTR 2F: 5 -CGTTAGCATCGAAACTGCTG- 3 216–252 46750.75
R: 5 -CCACTCAATCTCGTGGGAAA- 3
VCTR 3F: 5 -AGTGGGCACAGAGTGTCAAA- 3 218–276177870.84
R: 5 -GCTGTACTCTGGCACATCCA- 3
VCTR 4F: 5 -TCGAATGTATGGGGAACATTT- 3 278–300303 17 0.92
R: 5 -TTAATACCCCTTTCTTCCGATG- 3
VCTR 5F: 5 -GAAGAGACGGACCTTGATCG- 3 228–251168560.65
R: 5 -TCGCAGCAAGTTTGCTTAAC- 3
VCTR 6F: 5 -GTTTTATCGCTGATGCGTGA- 3 211–269 540 40.59
R: 5 -GCAAGCAAGTGCCGAATTAT- 3
VCTR 7F: 5 -GTTTGAGAGCTCGCCTCTTG- 3 328–369 187 110.89
R: 5 -CAATCTCGCCAATGCTTATG- 3

position in chromosome II of 𝑉 . 𝑐 𝑜 𝑙 𝑒 𝑟 𝑎 𝑒 genom.

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