An Integrative Approach to Infer Regulation Programs in a Transcription Regulatory Module Network

Table 1

Top twenty regulator-module interactions as given by the union method. *Records represent true positives at the 𝑃 value threshold of 0.05.

Rank	Regulator-module	𝑃 value	Ranks from individual algorithms
			LIMMA	LeMoNe	Inferelator
1	DAL80-11*	3.47𝑒−10	1	130	88
	IME4-46	1.00𝑒+00	48	1	2906
	HAP1-13	1.00𝑒+00	3076	169	1
4	HAP4-7*	1.67𝑒−30	50	9	2
	MET32-11*	1.21𝑒−13	2	30	7
	DAL80-51*	0.00𝑒+00	4	2	10281
7	PHD1-36*	5.20𝑒−03	3	342	5
	HAP4-30	5.33𝑒−02	23	3	32
	MET32-27	1.00𝑒+00	9680	3702	3
10	TOS8-24*	1.45𝑒−02	49	4	111
	GAT1-59*	2.55𝑒−03	802	5059	4
12	XBP1-10*	1.08𝑒−02	59	5	602
	DAL82-48	1.00𝑒+00	5	49	7771
14	UGA3-11	2.35𝑒−01	6	509	59
	USV1-28	1.00𝑒+00	190	6	10281
	SKO1-57	1.00𝑒+00	4663	10026	6
17	GAT1-11*	4.24𝑒−05	34	7	28
	ACA1-48	1.00𝑒+00	7	1048	7773
19	PDR3-13	3.90𝑒−01	12	8	10281
	DAL80-40	1.00𝑒+00	8	367	27