BioMed Research International / 2012 / Article / Tab 2

Research Article

Copy-Number Variations Observed in a Japanese Population by BAC Array CGH: Summary of Relatively Rare CNVs

Table 2

Summary of the CNVs detected in single unrelated individuals.

Clone
number
Chrom.
number
Position
(Mb)
Delete
or Amp(1)
Known
variant
Segmetal
duplication
Known
inheritance(2)
Redon
[4]
Redon(3)
[4]
Park et al.
[24]
Ikeda et al.
[25]

RP5-895L21231.9DeletionAbs(4)Abs(6)MOAbs(8)AbsAbsAbs
RP11-204C2333DeletePre(5)AbsFAAbsAbsAbsAbs
RP11-80D22443.7AmpPreAbsFAAbsAbsAbsAbs
RP11-22O84141.1DeletionAbsAbsNDAbsAbsAbsAbs
RP11-104N136165DeletionPreAbsFAAbsAbsAbsAbs
RP11-90O18763.8AmpPreAbsFAAbsAbsAbsAbs
RP11-79I1984Delete PreAbsMOAbsPreAbsAbs
RP11-90J2188.8Amp PreAbsFAAbsAbsAbsAbs
RP11-90M13825.9DeletionAbsAbsFAAbsAbsAbsAbs
RP11-91G3891.1DeletionPreAbsNDPre(9)PreAbsAbs
RP11-91H191058.2DeletionPreAbsFAAbsAbsAbsAbs
RP11-176H121065.7AmpPreAbsMOAbsAbsAbsAbs
RP11-18B91140.3DeletePreAbsMOAbsAbsAbsAbs
RP11-75H241158.6AmpPrePre(7)MOPreAbsPreAbs
RP11-90N71211.4AmpPrePreMOAbsAbsPreAbs
RP11-86C31389DeletionPreAbsFAAbsAbsAbsAbs
RP11-80H141520.5AmpPreAbsFAAbsAbsAbsPre
RP11-81H51544.7DeleteAbsAbsMOAbsAbsPreAbs
RP11-90E51598.4AmpPreAbsFAAbsAbsAbsAbs
RP11-79I151616.6DeletionPrePreMOPrePreAbsAbs
RP11-89L61675.7AmpAbsAbsMOAbsAbsAbsAbs
CTB-15E161679.0Amp PreAbsMOAbsAbsAbsAbs
RP11-265I61836.1Delete AbsAbsFAAbsAbsAbsAbs
RP11-89N11876.0Amp PreAbsMOAbsAbsAbsPre
RP5-908M142060.4AmpPreAbsMOPreAbsPreAbs

Remarks Each CNV as below was detected in three individuals in different families, but two of them were detected in individuals who were not selected as an unrelated individual. Both CNVs were not identified in three other studies of Japanese

RP11-88B181056.6DeletionPreAbsND1 (3)
RP11-86B613104AmpAbsAbsND1 (3)

(1)Amplification. (2)CNVs were inherited from the mother (MO) or the father (FA). (3)Data from Affymetrix oligo array. CNVs absent (4)or present (5)in previous papers. Segmental duplication absent (6)or present (7)in BAC clones on which CNVs were observed. CNVs absent (8)or present (9)in Japanese data from three types of oligo arrays.

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