BioMed Research International / 2013 / Article / Tab 4

Research Article

Analysis of Structures and Epitopes of Surface Antigen Glycoproteins Expressed in Bradyzoites of Toxoplasma gondii

Table 4

Similarity between SAG2C, -2D, -2X, -2Y and top identified structural analogs BSR4 protein.

Protein modelTM-scoreaRMSDbIDENcCov.d

SAG2A0.5831.200.2440.596
SAG2B0.6612.420.1670.755
SAG2C0.6731.680.1790.698
SAG2D0.6702.850.1940.763

TM-score of the structural alignment between the query structure and known structures in the PDB library.
bRMSD is the RMSD between residues that are structurally aligned by TM-align.
cIDEN is the percentage sequence identity in the structurally aligned region.
dCov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.