BioMed Research International / 2013 / Article / Tab 1 / Review Article
Quantification of Human and Animal Viruses to Differentiate the Origin of the Fecal Contamination Present in Environmental Samples Table 1 Oligonucleotide primers and probes used for the detection and quantification of viral indicators.
Primers and probes Virus Positiona Reference Sequence (5′-3′) ADF Human adenovirus (HAdV) 18869–18887 CWTACATGCACATCKCSGG ADR 18919–18937 [26 ] CRCGGGCRAAYTGCACCAG ADP1 18889–18916 FAM-CCGGGCTCAGGTACTCCGAGGCGTCCT-BHQ1 JE3F JC polyomavirus (JCPyV) 4317–4339 ATGTTTGCCAGTGATGATGAAAA JE3R 4251–4277 [27 ] GGAAAGTCTTTAGGGTCTTCTACCTTT JE3P 4313–4482 FAM-AGGATCCCAACACTCTACCCCACCTAAAAAGA-BHQ1 QB-F1-1 Bovine polyomavirus (BPyV) 2122–2144 CTAGATCCTACCCTCAAGGGAAT QB-R1-1 2177–2198 [28 ] TTACTTGGATCTGGACACCAAC QB-P1-2 2149–2174 FAM-GACAAAGATGGTGTGTATCCTGTTGA-BHQ1 Q-PAdV-F Porcine adenovirus (PAdV) 20701–20718 AACGGCCGCTACTGCAAG Q-PAdV-R 20751–20768 [29 ] CACATCCAGGTGCCGC Q-PAdV-P 20722–20737 FAM-AGCAGCAGGCTCTTGAGG-BHQ1 qOv_F Ovine polyomavirus (OPyV) VP
region CAGCTGYAGACATTGTGG qOv_R [30 ] TCCAATCTGGGCATAAGATT qOv_P FAM-ATGATTACCAAGCCAGACAGTGGG-BHQ1 Q-PaV-F
Chicken/turkey parvovirus (ChPV/TuPV) 3326–3345 AGTCCACGAGATTGGCAACA Q-PaV-R 3388–3407 [31 ] GCAGGTTAAAGATTTTCACG Q-PaV-Pr 3356–3378 6FAM-AATTATTCGAGATGGCGCCCACG-BHQ1
The sequence positions are referred to strains J01917.1 (HAdV), NC_001699.1 (JCPyV), D13942 (BPyV), AJ237815 (PAdV), and GU214706 (ChPV/TuPV) from Genbank.
VP1: virion protein 1.