BioMed Research International / 2013 / Article / Tab 1 / Research Article
The Complete Exosome Workflow Solution: From Isolation to Characterization of RNA Cargo Table 1 RNA representation in exosomes versus parental HeLa cells: top 10 RNA transcripts organized by RNA type. Values for cells and exosome preparations represent mean counts of mapped reads to reference transcripts from three replicate cell lysates. Accession numbers and gene symbols were obtained from NCBI RefSeq annotation.
(a) āmiRBase ID Cells miRBase ID Exosomes hsa-mir-4279 731.00 hsa-mir-21 2015.33 hsa-mir-1234 505.00 hsa-mir-3160-1 1007.33 hsa-mir-451a 410.33 hsa-mir-4739 894.33 hsa-mir-3665 330.33 hsa-mir-31 827.33 hsa-mir-4449 265.67 hsa-mir-23a 783.67 hsa-mir-3960 240.67 hsa-mir-24-2 644.00 hsa-mir-3160-1 238.00 hsa-mir-1273a 521.67 hsa-mir-1273a 233.67 hsa-mir-30a 439.33 hsa-mir-1273g 195.33 hsa-mir-451a 371.33 hsa-mir-92b 180.00 hsa-mir-1273g 368.00 tRNA ID Cells tRNA ID Exosomes chr1.trna109-GluCTC 175.33 chr6.trna61-MetCAT 34129.67 chr16.trna34-GlyCCC 147.33 chr1.trna109-GluCTC 15924.33 chr16.trna18-GlyGCC 121.67 chr16.trna18-GlyGCC 5696.67 chr6.trna61-MetCAT 101.00 chr1.trna33-GlyGCC 2354.33 chr17.trna28-CysGCA 86.33 chr16.trna10-LysCTT 2119.67 chr5.trna5-ValAAC 52.67 chr5.trna11-LysCTT 2107.33 chr5.trna11-LysCTT 48.00 chr13.trna3-GluTTC 1987.00 chr1.trna33-GlyGCC 35.67 chr16.trna34-GlyCCC 1928.33 chr17.trna10-GlyTCC 33.00 chr1.trna54-GluCTC 1450.33 chr13.trna3-GluTTC 25.33 chr1.trna124-GlyCCC 1365.00
(b) āmRNA Accession Cells mRNA Accession Exosomes MTRNR2L2 NM_001190470 4793.67 SUSD2 NM_019601 3172.33 MTRNR2L8 NM_001190702 2646.33 BRWD3 NM_153252 501.00 SETD2 NM_014159 544.67 SENP6 NM_015571 362.67 CUX1 NM_001202543 475.33 FAM59B NM_001191033 355.33 TUBA1C NM_032704 475.33 TUBBA4 NM_006087 338.33 FXR1 NM_004860 363.33 QRFPR NM_198179 313.33 SYT6 NM_001253772 319.00 MDK NM_001012334 307.00 FUS NM_001170634 287.33 MTRNR2L2 NM_001190470 302.00 MDK NM_001012334 238.67 CWC25 NM_017748 266.00 UBE2S NM_014501 230.33 DUSP13 NM_001007272 232.00 ncRNA Accession Cells ncRNA Accession Exosomes SNORA72 NR_002581 3865.67 RNY5 NR_001571 8482.67 MALAT1 NR_002819 879.67 RNY4 NR_004393 6206.33 RNU1-9 NR_004426 798.00 RN5S3 NR_023365 2343.67 RN5S1 NR_023363 668.67 RNY1 NR_004391 2109.67 RNU2-1 NR_002716 629.00 RNY4P8 NR_033356 2094.33 RN7SL1 NR_002715 581.67 RNY3 NR_004392 1119.33 SNORD3C NR_006881 531.00 RN7SL2 NR_027260 702.33 VDAC1 NR_036624 437.33 SNORD31 NR_002560 619.33 RN7SK NR_001445 435.33 RNU1-5 NR_004400 561.67 RN7SL2 NR_027260 425.67 RN7SL1 NR_002715 457.33