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BioMed Research International
Volume 2013 (2013), Article ID 406342, 10 pages
http://dx.doi.org/10.1155/2013/406342
Research Article

A Comparison of Synonymous Codon Usage Bias Patterns in DNA and RNA Virus Genomes: Quantifying the Relative Importance of Mutational Pressure and Natural Selection

Department of Zoology, University of British Columbia, Vancouver, BC, Canada V6T 1Z4

Received 15 April 2013; Revised 30 June 2013; Accepted 4 August 2013

Academic Editor: Sankar Subramanian

Copyright © 2013 Youhua Chen. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [17 citations]

The following is the list of published articles that have cited the current article.

  • Youhua Chen, and You-Fang Chen, “Analysis of synonymous codon usage patterns in duck hepatitis A virus: a comparison on the roles of mutual pressure and natural selection,” VirusDisease, vol. 25, no. 3, pp. 285–293, 2014. View at Publisher · View at Google Scholar
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  • Supriyo Chakraborty, Arif Uddin, and Monisha Nath Choudhury, “Factors affecting the codon usage bias of SRY gene across mammals,” Gene, 2017. View at Publisher · View at Google Scholar
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  • Binata Halder, Arup Kumar Malakar, and Supriyo Chakraborty, “Dissimilar substitution rates between two strands of DNA influence codon usage pattern in some human genes,” Gene, 2017. View at Publisher · View at Google Scholar
  • Bornali Deb, Arif Uddin, Gulshana Akthar Mazumder, and Supriyo Chakraborty, “Analysis of codon usage pattern of mitochondrial protein-coding genes in different hookworms,” Molecular and Biochemical Parasitology, 2017. View at Publisher · View at Google Scholar
  • Ri Wei Xia, Xue Mei Yin, Wen Bin Bao, Wei Yun Qin, Guo Qiang Zhu, and Sheng Long Wu, “Genome-wide analysis of codon usage bias patterns in an enterotoxigenic Escherichia coli F18 strain,” Genes and Genomics, vol. 39, no. 11, pp. 1285–1295, 2017. View at Publisher · View at Google Scholar
  • Yu Sun, Daniel Tamarit, and Siv G E Andersson, “Switches in Genomic GC Content Drive Shifts of Optimal Codons under Sustained Selection on Synonymous Sites.,” Genome biology and evolution, vol. 9, no. 10, pp. 2560–2579, 2017. View at Publisher · View at Google Scholar
  • Prosenjit Paul, Arup Kumar Malakar, and Supriyo Chakraborty, “Codon usage vis-a-vis start and stop codon context analysis of three dicot species,” Journal of Genetics, 2018. View at Publisher · View at Google Scholar
  • Kamatani Takaaki, and Shirota Tatsuo, “Analysis of factors affecting codon usage bias in human papillomavirus,” Journal of Bioinformatics and Sequence Analysis, vol. 9, no. 1, pp. 1–9, 2018. View at Publisher · View at Google Scholar