Research Article

An Accurate Method for Prediction of Protein-Ligand Binding Site on Protein Surface Using SVM and Statistical Depth Function

Table 1

The values of five indices on the training set and test set for well-trained SVM.

DatasetAccuracyPrecisionSensitivitySpecificityMCC

Train set77.55%69.38%56.15%87.96%49.68%
Test set (our method)80.36%75.88%53.53%92.38%50.85%
Test set (CASTp)56.49%20.81%41.67%60.21%2.0%