BioMed Research International / 2013 / Article / Tab 1

Research Article

On the Difference in Quality between Current Heuristic and Optimal Solutions to the Protein Structure Alignment Problem

Table 1

Average (per-pair) accuracy of STRUCTAL, TM-align, and LOCK2 in the FSSP benchmark, for all structural levels combined. The best results are indicated in bold.

NumPairs(3)PSI(3)SI

STRUCTAL
 Original50.470.597.85
 Near-optimal53.810.637.37
TM-align
 Original53.350.625.86
 Near-optimal55.850.655.95
LOCK2
 Original51.750.608.35
 Near-optimal58.460.685.69

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