CpGislandEVO: A Database and Genome Browser for Comparative Evolutionary Genomics of CpG Islands

Table 1

List of orthologous genes to the human query gene KDM1A for the lysine-specific histone demethylase 1A, offering links to Ensembl and UCSC genome browsers, as well as to a specific island viewer based on JBrowse.

(a) Query gene

Species	Gene name	Link Ensembl	Link UCSC	Link JBrowseViewer
Homo sapiens	KDM1A	hg_KDM1A_ensembl	hg_KDM1A_ucsc	hg_KDM1A_evoDB

(b) Orthologous genes

Species	Gene name (EnsemblID)	Link Ensembl	Link UCSC	Link JBrowseViewer
Gorilla gorilla	KDM1A (ENSGGOG00000003664)	gorgor_KDM1A_ensembl	gorgor_KDM1A_ucsc	gorgor_KDM1A_evoDB
Macaca mulatta	KDM1A (ENSMMUG00000009773)	rhemac_KDM1A_ensembl	rhemac_KDM1A_ucsc	rhemac_KDM1A_evoDB
Mus musculus	Kdm1a (ENSMUSG00000036940)	mm_kdm1a_ensembl	mm_kdm1a_ucsc	mm_kdm1a_evoDB
Pan troglodytes	KDM1A (ENSPTRG00000000321)	pantro_KDM1A_ensembl	pantro_KDM1A_ucsc	pantro_KDM1A_evoDB
Pongo abelii	KDM1A (ENSPPYG00000001747)	ponabe_KDM1A_ensembl	ponabe_KDM1A_ucsc	ponabe_KDM1A_evoDB
Rattus norvegicus	Kdm1 (ENSRNOG00000022372)	rn_kdm1a_ensembl	rn_kdm1a_ucsc	rn_kdm1a_evoDB