GPU-Based Cloud Service for Smith-Waterman Algorithm Using Frequency Distance Filtration Scheme

Table 2

Overall computation time of CUDA-SWf with query sequence length (700).

MP	Number of selected database sequences	Differences; (worst score)	Differences; (best score)	CUDA-SWf; (second)
100%	32,133	3,542	1,169	8.27
50%	17,913	3,542	1,169	5.77
30%	8,578	3,536	1,169	4.63
10%	7,007	3,525	1,169	4.4