Research Article
Simpute: An Efficient Solution for Dense Genotypic Data
Table 9
Error rates* and computation time for random missing SNPs of high LD for the YRI samples.
| | Method/missing rate |
Simpute | BEAGLE | | Error rate | Running time (sec) | Error rate | Running time (sec) |
| | 0.1% | 2.57/271 (0.95%) | 12.42 | 2.23/271 (0.82%) | 187.80 | | 0.5% | 13.54/1353 (1.00%) | 12.925 | 11.2/1353 (0.83%) | 188.41 | | 1% | 27.19/2705 (1.00%) | 13.08 | 22.89/2705 (0.85%) | 187.45 | | 5% | 161.02/13525 (1.19%) | 15.921 | 119.94/13525 (0.887%) | 191.29 |
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rates = number of error imputed entries/number of missing entries *100%.
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