Development, Disease, and Regeneration of Tissues in the Dental-Craniofacial ComplexView this Special Issue
Research Article | Open Access
Sook-Kyung Lee, Kyung-Eun Lee, Su Jeong Song, Hong-Keun Hyun, Sang-Hoon Lee, Jung-Wook Kim, "A DSPP Mutation Causing Dentinogenesis Imperfecta and Characterization of the Mutational Effect", BioMed Research International, vol. 2013, Article ID 948181, 7 pages, 2013. https://doi.org/10.1155/2013/948181
A DSPP Mutation Causing Dentinogenesis Imperfecta and Characterization of the Mutational Effect
Mutations in the DSPP gene have been identified in nonsyndromic hereditary dentin defects, but the genotype-phenotype correlations are not fully understood. Recently, it has been demonstrated that the mutations of DSPP affecting the IPV leader sequence result in mutant DSPP retention in rough endoplasmic reticulum (ER). In this study, we identified a Korean family with dentinogenesis imperfecta type III. To identify the disease causing mutation in this family, we performed mutational analysis based on candidate gene sequencing. Exons and exon-intron boundaries of DSPP gene were sequenced, and the effects of the identified mutation on the pre-mRNA splicing and protein secretion were investigated. Candidate gene sequencing revealed a mutation (c.50C > T, p.P17L) in exon 2 of the DSPP gene. The splicing assay showed that the mutation did not influence pre-mRNA splicing. However, the mutation interfered with protein secretion and resulted in the mutant protein remaining largely in the ER. These results suggest that the mutation affects ER-to-Golgi apparatus export and results in the reduction of secreted DSPP and ER overload. This may induce cell stress and damage processing and/or transport of dentin matrix proteins or other critical proteins.
Hereditary dentin defects are categorized into three types of dentinogenesis imperfecta (DGI) and two types of dentin dysplasia (DD) . DGI type I (MIM 166240) is a syndromic dental phenotype of osteogenesis imperfecta. The phenotype is similar to DGI type II but the penetrance is incomplete and the expressivity is also variable . DGI type II (MIM 125490) is characterized by opalescent discolored dentition, pulpal calcification, and bulbous crown shape. DGI type III (MIM 125500), originally thought to be specific to the Brandywine isolate, is a severe form of DGI type II with multiple pulp exposures and shell-like teeth . DD type II (MIM 125420) is similar to DGI type II in the deciduous dentition but tooth discoloration is minimal, and pulp chambers are thistle-tube shaped with pulp stones in the permanent dentition. In DD type I (MIM 125400), teeth are normal in shape, form, and consistency in the deciduous and permanent dentition. In some cases, color of the teeth may display a slight amber discoloration. However, the roots are short and the pulp obliteration results in a crescent-shaped pulpal remnant in the permanent dentition and a total pulpal obliteration in the deciduous dentition .
The dentin sialophosphoprotein (DSPP) gene is located on chromosome 4q21 and encodes the major non-collagenous protein in the dentin matrix . DSPP is rapidly cleaved by proteases into three major proteins: dentin sialoprotein (DSP), dentin glycoprotein (DGP), and dentin phosphoprotein (DPP) [3, 4]. Mutations in the DSPP gene have been identified to cause DGI type II, III, and DD type II [5–25]. Therefore, these diseases are not separate, but are allelic with differing severity . Even though there are several other candidate genes for nonsyndromic hereditary dentin defects , only mutations in the DSPP gene have been identified to date.
Reduction of DSPP and/or improper mineralization induced by the mutant DSPP gene could result in defective dentin mineralization. Alternatively, accumulation of the mutant DSPP in the odontoblast would result in cellular damage and influence protein processing and/or transporting system during rapid dentin matrix formation, particularly for dentin matrix proteins including DSPP .
A functional domain at the N-terminus of DSPP and its possible role in the signal peptide cleavage have been suggested due to its proximity to the signal peptide cleavage site . Secreted DSPP has a highly conserved N-terminal sequence beginning with Ile Pro Val (IPV) after cleavage of the 15 amino acid signal peptide. Mutations affecting the IPV domain would result in errors in signal peptide cleavage processing and subsequently affect protein secretion.
In this study, we identified a mutation in the DSPP gene that causes DGI type III and investigated the effect of the mutation on pre-mRNA splicing and protein secretion in order to better understand the molecular genetic pathogenesis underlying the aberrant dentin biomineralization.
2. Materials and Methods
2.1. Enrollment of Human Subjects
The protocols and subject consents for this study were reviewed and approved by the Institutional Review Board at Seoul National University Dental Hospital. We identified a Korean family with dentinogenesis imperfecta type III, and seven family members were recruited for this study. Clinical and radiologic examinations were performed, and blood samples were collected with the understanding and written consent of each subject according to the Declaration of Helsinki.
2.2. Primers, Polymerase Chain Reaction (PCR), and DNA Sequencing
Genomic DNA was extracted from peripheral whole blood using the QuickGene DNA whole blood kit S with QuickGene-Mini80 equipment (Fujifilm, Tokyo, Japan) according to the manufacturer’s instructions. Primers and conditions for PCR and DNA sequencing were previously described . PCR reactions were performed using HiPi DNA polymerase premix (ElpisBio, Daejeon, Korea), and the PCR products were purified with a PCR Purification Kit (ElpisBio). DNA sequencing was performed at the DNA sequencing center (Macrogen, Seoul, Korea). All nucleotide numbering began from the A of the ATG translational initiation codon of the human DSPP reference sequence (NM-014208.3).
2.3. Cloning of Genomic DNA and Mutagenesis
A wildtype human DSPP gene fragment including exons two, three, and four was cloned into the pSPL3 splicing vector as previously described . Mutation was introduced by PCR mutagenesis (forward: 5′-GTA GCA TGG GCC ATT CTA GTA AGT ATG CCT TTC-3′, reverse: 5′-GAA AGG CAT ACT TAC TAG AAT GGC CCA TGC TAC-3′), and the sequence was confirmed by direct sequencing.
2.4. In Silico Splicing Assay
The mutational effect on pre-mRNA splicing was analyzed by two computer programs: SplicePort (http://spliceport.cbcb.umd.edu/) and NNSPLICE version 0.9 (http://www.fruitfly.org/seq_tools/splice.html).
2.5. In Vitro Splicing Assay
COS-7 cells were transfected with wildtype and mutant pSPL3 vectors, and total RNA was isolated after 48 hours using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). cDNA was generated from 4 μg RNA using RT-PCR premix (ElpisBio). RT-PCR amplification (wild type amplicon size: 666 bp; forward: 5′-TAG AGT CGA CCC AGC ACC AT-3′, reverse: 5′-CCT CGT TTC TAC AGG AAT TCT CA-3′) was performed using HiPi PCR premix (ElpisBio). Amplification products were resolved on a 1% agarose gel and characterized by DNA sequencing.
2.6. DSP Secretion Analysis
The coding region of the entire human DSP protein (from aa 1 to aa 382) was amplified by an RT-PCR reaction using PCR primers (forward: 5′-GGA AGC TTG AAA ATG AAG ATA ATT ACA TA-3′, reverse: 5′-GGG GAT CCC CGC TGG GAC CCT TGA TTT CTA-3′) and cloned into a pEGFP-N1 vector after double digestion with HindIII and BamHI restriction endonucleases. PCR mutagenesis was performed to replace C with T (c.50C > T) using primers (forward: 5′-GCA GTA GCA TGG GCC ATT CTA GTT CCT CAA AGC-3′, reverse: 5′-GCT TTG AGG AAC TAG AAT GGC CCA TGC TAC TGC-3′). Sequences of normal and mutant pEGFP-N1 vectors were confirmed by direct plasmid sequencing. Normal and mutant DSP pEGFP-N1 vectors were transiently transfected into HEK293T cells using Lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA, USA). Cell lysate and culture media (Dulbecco’s Modified Eagle’s Media) without serum were harvested after 48 hours. Cell lysate (40 μg) and culture media (20 μL) were run on a 10% SDS-polyacrylamide gel and subjected to Western blot using anti-DSP (Santa Cruz Biotechnology, Santa Cruz, CA, USA) and anti-GAPDH (ABM, Richmond, ON, Canada) antibodies. Silver staining was performed to normalize the amount of the culture media. Band intensity was measured using ImageJ (NIH). Experiments were duplicated, and statistical analysis (independent t-test) was performed to compare the amount of wildtype and mutant DSP in the media and cell lysate.
2.7. Fluorescent Immunocytochemistry
Normal and mutant DSP pEGFP-N1 vectors were transiently transfected into HEK293T cells using lipofectamine 2000 reagent (Invitrogen). The transfected cells were seeded on the cover glass coated with poly-L-lysine (Sigma-Aldrich, St. Louis, MO, USA). After 24 hours, cells were washed with PBS and fixed with 4% paraformaldehyde for 20 min. Permeabilized cells were treated with 0.1% Triton X-100 for 15 min and subsequently blocked with 10% goat serum (Vector Lab, Burlingame, CA, USA) for 1 hr. For ER staining, slides were incubated with mouse monoclonal anti-Calnexin (CANX) antibody (Millipore, Milford, MA, USA) for 2 hr followed by incubation with Texas Red conjugated goat anti-mouse secondary antibody (Santa Cruz Biotechnology) for 1 hr. For Golgi apparatus staining, the slides were incubated with rabbit monoclonal anti-Golgi matrix protein (GM130) antibody (Epitomics, Burlingame, CA, USA) for 2 hr followed by incubation with Texas Red conjugated goat anti-rabbit secondary antibody (Vector Lab) for 1 hr. Nuclei were stained with 20 μM H33342 (Sigma-Aldrich) for 10 min. Slides were coverslipped with fluorescence mounting medium (Dako, Carpinteria, CA, USA) and the fluorescent images were captured using an Olympus FV300 laser-scanning confocal microscope.
3. Results and Discussion
3.1. Clinical Findings
The proband (IV : 2) first visited the Pediatric Dental Clinic of the Seoul National University Dental Hospital at 2.5 years of age (Figure 1(a)). Her deciduous dentition displayed severe attrition and marked discoloration. Periapical inflammations were observed in several teeth in which the pulp tissue was exposed by attrition (Figure 1(d)). Her father (III : 2) was 29 years old, but had lost many teeth and had full-coverage prosthodontics on his remaining permanent teeth (Figure 1(e)). There was no history of bone fragility or symptoms of hearing loss in the family.
3.2. Mutation Results
Sequencing analysis revealed a C to T transition in exon 2 (c.50C > T) of the DSPP gene. This sequence variation correlated perfectly with the presence of the disease (Figure 1). This sequence variation was not present in 100 unaffected control individuals from the Korean population (data not shown). This suggests that the mutation is not a common variant of the DSPP gene. The same mutation has been recently identified in a Chinese family . This mutation changes the proline residue at the +2-position (P2′) from the signal peptide cleavage site to the leucine residue (p.P17L). The Pro17 residue is conserved in human, mouse, rat, pig, and cow.
3.3. Splicing Assay
In silico analyses of the mutational effect on pre-mRNA splicing were inconsistent. One program yielded a change in the prediction value suggesting a defective splicing event (0.90 → 0.78 as a donor site), while the other program did not (0.98 → 0.98).
RT-PCR showed a single amplified product in both the wildtype and the mutant pSPL3 vectors (Figure 2). The forward primer binds at the boundary of the donor site of the pSPL3 vector and at the beginning of exon 2 of the DSPP gene, while the reverse primer binds at the middle of exon 4 of the DSPP gene. If intron 2 was not properly excised, the size of the amplicon would be 1811 bp. Sequencing analysis of the amplicons exhibited normally spliced sequences, indicating that this mutation in the second position from the end of exon 2 (c.50C > T) did not influence normal pre-mRNA splicing and resulted in pure missense mutations (p.P17L) (Figure 2).
3.4. DSP Secretion Analysis
Wildtype DSP was efficiently secreted to the culture media, while only a small amount of the mutant DSP was detected in the culture media. The secreted amount of wildtype DSP was more than 7-fold greater compared to the P17L mutant DSP () (Figure 3). Cellular retention of the mutant DSP was detected in the cell lysate. Western blot of the cell lysate showed that intracellular retention of the P17L mutant DSP was much higher (12.1-fold) than the wildtype DSP ().
3.5. Fluorescent Immunocytochemistry
Wildtype DSP was localized exclusively in the Golgi apparatus (Figure 4). In contrast, the P17L mutant DSP showed widespread expression in the cytoplasm. The mutant DSP largely remained in the ER, even though a portion was localized in the Golgi apparatus.
The proband showed multiple pulp exposures and severe attrition. The father of the proband was 29 years old, but had lost many teeth. Interestingly, the disease causing the mutation of the Brandywine isolate was c.49C > T (p.P17S) . The same mutation (c.49C > T, p.P17S) was also found in a Chinese family . The clinical phenotype was also severe according to the clinical photos and panoramic radiograph. Pro17 is a well-conserved amino acid, and it is one of the mutational hot spots in the DSPP gene . This data confirms that DGI type III is not confined to a specific (Brandywine isolate) population and is a severe form of DGI type II. Another mutation changing Pro17 (c.49C > A, p.P17T) was reported in a Chinese family . Clinical severity was not reported in detail, but the affected individuals also presented with progressive sensorineural high-frequency hearing loss. However, hearing loss is not common in DGI families, so further studies are needed to characterize the functional role of DSPP mutations in the pathogenesis of hearing loss.
The identified mutation was located in the second nucleotide position from the end of exon 2. Despite its close proximity to the exon-intron boundary, the mutation did not influence normal pre-mRNA splicing. Therefore, the mutation resulted in a pure missense mutation and changed the highly conserved amino acid from Pro17 to Leu17.
The mutation could affect normal signal peptide cleavage based on its proximity to the cleavage site and the nature of the changed amino acid. Pro17 is located at the P2′ position from the signal peptide cleavage site (between Ala15 and Ile16). Proline is a nonpolar neutral amino acid with a hydropathy index of −1.6, while leucine is a non-polar neutral amino acid with a hydropathy index of 3.8. In silico analyses predicted reduced efficiency in the signal peptide cleavage. Changing Pro17 to Leu17 decreased the signal peptide probability (0.995 → 0.964) and the maximum cleavage site probability score (0.947 → 0.694) by SignalP 3.0 (http://www.cbs.dtu.dk/services/SignalP/). A decreased cleavage score (9.2 → 7.0) was also obtained by SIG-Pred (http://bmbpcu36.leeds.ac.uk/cgi-bin/sig_pred/Signal.cgi).
DSP expression and secretion were greatly affected by the introduction of the mutation. The amount of mutant DSP in the culture media was extremely small compared to the amount of wildtype DSP. In contrast to the culture media, mutant DSP was detected in the cell lysate, while wildtype DSP was faintly detected. These results indicate that the secretion of mutant DSP protein was severely affected and some mutant DSP protein was retained in the cell. This result is in accordance with the recent study on the rough ER trafficking errors caused by mutant DSPP .
Fluorescent immunocytochemical data showed that the wildtype DSP was efficiently transported to the Golgi apparatus for further export to the secretory pathway. However, the mutant DSP was largely retained in the ER, even though a portion was transported to the Golgi apparatus. Reduced efficiency in signal peptide cleavage could result in ER retention. However, this retention could also be resulted from disruption of the ER export signal by the Proline at the P2′ position .
A mutation (c.16T > G, p.Y6D) in the signal peptide resulted in DD type II, which is considered as a mild form of DGI type II. This mutation was shown to result in an absence of DSPP protein production from the mutated allele due to the defective signal peptide . The amount of DSPP protein resulting from the mutated allele was nearly as absent as the mutation in this study. Therefore, the phenotypic difference cannot be explained only by the reduction in the amount of wildtype DSPP. The P17L mutant DSPP protein can be translocated into the ER with an intact signal peptide, but is expected to have a dominant-negative effect on cell function and/or on dentin matrix mineralization due to incomplete signal peptide cleavage , loss of the ER export signal, or protein misfolding. In addition to the defect in secretory pathway itself, some secreted mutant DSPP may cause defective mineralization. Further study is required to determine the exact cause of the pathogenesis of the DSPP-associated dentin defect.
In summary, we have identified a mutation in exon 2 of the DSPP gene that caused DGI type III. The mutation did not influence pre-mRNA splicing but caused ER retention and defective protein secretion. It is possible that the severe phenotype observed in the affected family is caused by a dominant negative effect. Future molecular studies on the effect of individual mutation and function of DSPP may provide better insight into the normal and pathological basis of dentin biomineralization.
This work was supported by a Grant from the Bio & Medical Technology Development Program (2012-0006173) and a Science Research Center Grant to the Bone Metabolism Research Center (2012-0000487) of the National Research Foundation (NRF) funded by the Korean Government (MEST).
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