Research Article
Integration of High-Volume Molecular and Imaging Data for Composite Biomarker Discovery in the Study of Melanoma
Table 3
Top-20 LDA features after 100 repetitions.
| o.m | o.i | m.i top-means | nr.i top-means | nr.i top-20 | nr.i top-20 freq. | u.i top-means | u.i top-20 | u.i top-20 freq. | b.i top-means | b.i top-20 | b.i top-20 freq. |
| ABCD1 | I.mean | I.mean | HPCAL1.1 | L.mean | 78 | HPCAL1.1 | HPCAL1.1 | 75 | CDC37L1 | L.std | 77 | CRIM1.1 | mean.R | mean.R | MMP1 | mean.G | 75 | Grad.std | mean.B | 69 | MMP1 | I.std | 74 | UPP1 | mean.G | mean.G | CDC37L1 | I.mean | 71 | CDC37L1 | I.mean | 63 | HPCAL1.1 | I.mean | 70 | GSTT1 | mean.B | mean.B | C2orf68 | I.std | 70 | Grad.mean | mean.G | 61 | ZSCAN18 | mean.G | 70 | HPCAL1.1 | A.mean | A.mean | A.mean | L.std | 68 | MMP1 | Grad.std | 59 | C2orf68 | L.mean | 69 | ZSCAN18 | L.std | L.std | ID4 | mean.B | 63 | ID4 | L.std | 59 | ALOX12 | A.mean | 68 | IFI16 | I.std | I.std | ZSCAN18 | std.B | 61 | SSBP2 | std.B | 58 | PARD3 | mean.B | 67 | SHARPIN | S.mean | S.mean | MTUS1 | std.G | 61 | NRP2 | I.std | 57 | ID4 | mean.R | 66 | TMEM80 | std.R | std.R | SSBP2 | mean.R | 60 | IFT81 | L.mean | 56 | MTUS1 | S.mean | 61 | HOMER3.1 | S.std | S.std | ALOX12 | A.mean | 59 | FOXO1 | CDC37L1 | 55 | IFT81 | std.B | 61 | PLAUR.1 | A.std | A.std | NCAPH | GMSM.mean | 54 | ZSCAN18 | A.mean | 53 | NCAPH | std.G | 59 | SNTB1 | std.B | std.B | ANG | PERIMETER | 54 | RRAS2 | B.std | 53 | NRP2 | std.R | 59 | SFRP1.1 | std.G | std.G | std.B | A.std | 53 | GPRIN2 | std.G | 52 | CYP3A5.1 | PERIMETER | 58 | MTUS1 | B.mean | ABCD1 | NRP2 | HPCAL1.1 | 53 | MTUS1 | PERIMETER | 51 | SSBP2 | DISSIMILARITY | 54 | RPRM | L.mean | B.mean | PARD3 | S.mean | 52 | ALOX12 | Grad.mean | 49 | ANG | A.std | 50 | FZD7 | H.std | UPP1 | CYP3A5.1 | B.mean | 50 | mean.B | std.R | 48 | FOXO1 | CDC37L1 | 50 | SRC | H.mean | L.mean | ABCD1 | std.R | 50 | NCAPH | A.std | 45 | C12orf29 | GMSM.mean | 49 | MMP1 | Distance.std | HPCAL1.1 | BAZ1B | COMPLEXITY | 48 | NEIL1 | mean.R | 45 | BAZ1B | B.std | 47 | LAMB4 | PERIMETER | ZSCAN18 | C12orf29 | S.std | 48 | IFI16 | DISSIMILARITY | 44 | ABCD1 | B.mean | 43 | NEK2 | COMPLEXITY | IFI16 | IFT81 | B.std | 45 | SLC7A8 | S.mean | 44 | MAOA.1 | COMPLEXITY | 43 |
|
|