Research Article

On Designing Multicore-Aware Simulators for Systems Biology Endowed with OnLine Statistics

Table 1

Performance on 1200 simulation instances of the Neurospora model (Intel 32 core platform).

Single trajectory information Overall data
(20 sim eng, 3 stat eng)
Number of samplesInterarrival timeThroughputOutput size

25.86  s2.70 MB/s82.40 MB
2.78  s28.59 MB/s823.98 MB
232.68 ns303.86 MB/s8.24 GB