BioMed Research International / 2014 / Article / Tab 1 / Research Article
WISCOD: A Statistical Web-Enabled Tool for the Identification of Significant Protein Coding Regions Table 1 The capacity to detect real exons from a large list of potential exons taking account of different levels of confidence (EPFE values) in a HAVANA subset of manual curated genes on HSA21.
transcripts = 116Mean Med. q25 q75 potential exons (total)26649.59 10790.00 3870.50 33168.00 real exons (total)9.23 7.00 3.00 13.00 % real enrichment 0.11 0.08 0.03 0.14 EPFE CHI-S LOGIT GAUSSIAN Mean Med. q25 q75 Mean Med. q25 q75 Mean Med. q25 q75 potential exons 39 27 9 55 68 46 17 89 110 77 23 141 % real exons <0.001 53.9 61.3 33.3 80.0 64.7 72.7 50.0 91.8 70.1 85.7 50.0 100 % real enrichment 16.9 16.3 6.0 22.4 12.0 11.1 4.4 14.6 8.5 7.8 3.2 11.6 potential exons 300 201 58 376 387 252 75 483 473 305 88 587 % real exons <0.005 79.6 96.2 82.5 100 81.4 100 83.3 100 81.9 100 82.5 100 % real enrichment 3.9 3.4 1.3 5.9 3.1 2.6 1.0 4.4 2.7 2.4 0.8 3.8 potential exons 604 369 105 725 788 493 134 918 857 537 143 1002 % real exons <0.01 84.9 100 87.1 100 85.5 100 88.9 100 86.3 100.0 90.7 100 % real enrichment 2.2 1.9 0.7 3.1 1.8 1.5 0.6 2.6 1.7 1.5 0.6 2.5 potential exons 1291 774 206 1465 1511 852 240 1697 1596 887 252 1795 % real exons <0.02 89.3 100 100 100 90.5 100 100 100 89.4 100 100 100 % real enrichment 1.2 1.0 0.4 1.7 1.1 1.0 0.3 1.6 1.0 0.9 0.3 1.5