Evaluation and Comparison of Multiple Aligners for Next-Generation Sequencing Data Analysis

Table 5

Parameters setting for in silico data: read lengths, error rates, indel sizes, indel freq.

Accuracy Evaluation	Read length (bp)	Read number	Error rate (%)	Indel size (bp)	Indel freq. (%)
Mismatch factor	50	5000000	0, 0.2, 0.5, 0.8, 1.0	0	0
Indel factor	50	5000000	0	2, 4, 7, 9	0.1
Read-length factor	300, 450, 600, 750, 1000	1000000	0.5	4	0.1