An Integrated Analysis of miRNA, lncRNA, and mRNA Expression Profiles
Table 3
Differentially expressed abundant mRNA and lncRNA species.
mRNA/lncRNA
Gene symbol
Chr (±)
HepG2 (Nor)
L02 (Nor)
Fold change
Up/down
mRNA
RBP4
chr10 (−)
16.41
4.90
11.51
Up
mRNA
APOA1
chr11 (−)
15.07
5.44
9.64
Up
mRNA
ALB
chr4 (+)
14.19
4.65
9.54
Up
mRNA
ID2
chr2 (+)
13.52
4.16
9.35
Up
mRNA
TFPI
chr2 (−)
13.26
4.29
8.97
Up
mRNA
SERPINA3
chr14 (+)
14.15
5.42
8.73
Up
mRNA
SRGN
chr10 (+)
5.26
13.59
−8.33
Down
mRNA
CD81
chr11 (+)
4.66
12.99
−8.33
Down
mRNA
FOLR1
chr11 (+)
5.00
14.50
−9.50
Down
mRNA
NNMT
chr11 (+)
3.74
13.28
−9.54
Down
mRNA
C11orf86
chr11 (+)
4.26
15.16
−10.90
Down
mRNA
BASP1
chr5 (+)
5.53
17.06
−11.53
Down
lncRNA
RP11-113C12.1
chr12 (−)
12.71
5.43
7.28
Up
lncRNA
D28359
chr13 (+)
13.95
6.63
7.31
Up
lncRNA
MGC12916
chr17 (+)
11.25
3.91
7.33
Up
lncRNA
ABCC6P1
chr16 (+)
12.28
4.89
7.39
Up
lncRNA
lincRNA-HEY1
chr8 (−)
12.12
4.70
7.42
Up
lncRNA
HSPEP1
chr20 (−)
13.22
5.60
7.61
Up
lncRNA
TMSL6
chr20 (−)
8.25
16.08
−7.83
Down
lncRNA
RP11-163G10.3
chr1 (−)
8.18
15.92
−7.74
Down
lncRNA
AC010907.3
chr2 (−)
7.44
15.07
−7.64
Down
lncRNA
BC106081
chr8 (−)
3.70
10.81
−7.11
Down
lncRNA
nc-HOXA11-86
chr7 (+)
3.83
10.65
−6.82
Down
lncRNA
AK054970
chr13 (+)
6.01
12.64
−6.62
Down
The table only lists the top 6 up- and downregulated mRNAs and lncRNAs based on the fold change values (). These mRNAs and lncRNAs are dominantly expressed. “Chr (±)” indicates genomic location on sense or antisense strands of human chromosomes. “Nor” indicates the normalized data.
