MAVTgsa: An R Package for Gene Set (Enrichment) Analysis

Figure 3

GST-plot for the gene set rasPathway in P53 dataset. The solid line is the empirical cumulative distribution function of the rank 𝑡-statistics for 10,100 genes in the array. The two-tailed shaded regions represent the 𝑡-statistics that had the 𝑃 value less than 0.01. There are 22 tick marks above the plot which display the location of the 𝑃 value of the genes from the gene set. The gene set shows underexpressed.