Research Article
MAVTgsa: An R Package for Gene Set (Enrichment) Analysis
Table 1
The original
values and adjusted
values (FDR and FWE) of the OLS and Hotelling’s
test of P53 data.
| GS name | GS size | OLS | | value | FDR | FWE | value | FDR | FWE |
| hsp27Pathway | 15 | 0* | 0 | 0 | 0.0001* | 0.0015 | 0.0003 | p53hypoxiaPathway | 20 | 0* | 0 | 0 | 0* | 0 | 0 | p53Pathway | 16 | 0* | 0 | 0 | 0* | 0 | 0 | P53_UP | 40 | 0* | 0 | 0 | 0* | 0 | 0 | Radiation_sensitivity | 26 | 0.0001* | 0.0062 | 0.0741 | 0* | 0 | 0 | rasPathway | 22 | 0.0015* | 0.0770 | 0.3618 | 0.0989 | 0.2621 | 0.0576 | HTERT_DOWN | 64 | 0.0029* | 0.1276 | 0.5490 | 0.0383 | 0.1636 | 0.1239 | ST_Interleukin_4_Pathway | 24 | 0.0079* | 0.3042 | 0.2743 | 0.0039* | 0.0375 | 0.1799 | ck1Pathway | 15 | 0.0089* | 0.3046 | 0.3107 | 0.0068* | 0.0582 | 0.1486 | ngfPathway | 19 | 0.0105 | 0.3102 | 0.2071 | 0.1313 | 0.2952 | 0.0862 | inflamPathway | 28 | 0.0133 | 0.3102 | 0.0737 | 0.0308 | 0.1492 | 0.0674 | lairPathway | 15 | 0.0134 | 0.3102 | 0.1119 | 0.0393 | 0.1636 | 0.2736 | no2il12Pathway | 17 | 0.0136 | 0.3102 | 0.2248 | 0.0245 | 0.1417 | 0.0549 | cytokinePathway | 21 | 0.0141 | 0.3102 | 0.2706 | 0.0290 | 0.1492 | 0.0217 | badPathway | 21 | 0.0157 | 0.3224 | 0.4702 | 0.0001* | 0.0015 | 0 |
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Denote values < 0.01.
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