MAVTgsa: An R Package for Gene Set (Enrichment) Analysis

Table 3

Type I error rate comparisons of two GSA methods for continuous phenotype, RF, and LCT, at a significance level of 0.05.

Method	𝜌=0.0	𝜌=0.3	𝜌=0.6	𝜌=0.9
𝑛=10, 𝑝=20, 𝑝1=5
RF	0.050	0.049	0.046	0.036
LCT	0.052	0.060	0.044	0.052
𝑛=20, 𝑝=100, 𝑝1=20
RF	0.051	0.042	0.049	0.052
LCT	0.060	0.051	0.050	0.064
𝑛=50, 𝑝=200, 𝑝1=40
RF	0.052	0.040	0.040	0.052
LCT	0.060	0.044	0.048	0.066