Long Non-Coding RNA Deregulation in Tongue Squamous Cell Carcinoma

Table 2

Differentially expressed lnRNA in tongue SCC microarray dataset identified by ncFANs reannotation.

Vega ID	LNCipedia ID	Locus conservation*	Exon number	Transcript size (bp)	Genome location	Expression	P value
OTTHUMG00000020778	lnc-PPP2R4-5	Zebrafish	4	901	chr9: 132096185–132109678/+	Upregulated	0.007
OTTHUMG00000012449	lnc-SPRR2D-1	Mouse	2	1997	chr1: 152902516–152921686/−	Upregulated	0.019
OTTHUMG00000012147	lnc-MAN1A2-1	Mouse	3	511	chr1: 117838142–117863958/+	Upregulated	0.024
OTTHUMG00000015099	lnc-FAM46A-1	Mouse, zebrafish	2	520	chr6: 82523003–82523874/−	Upregulated	0.037
OTTHUMT00000048111	lnc-MBL2-4:1	Mouse	4	570	chr10: 54210637–54230293/−	Upregulated	0.049
OTTHUMT00000048112	lnc-MBL2-4:3	Mouse	3	975	chr10: 54210637–54230293/−	Upregulated	0.049
OTTHUMG00000002490	lnc-AL355149.1-1	No	2	327	chr1: 16847189–16848303/+	Downregulated	0.003
OTTHUMG00000015764	lnc-STXBP5-1	Mouse, zebrafish	2	1477	chr6: 147708800–147711601/+	Downregulated	0.006

∗Locus conservation in Mus musculus and Danio rerio in comparison with Homo sapiens.