BioMed Research International / 2014 / Article / Tab 2

Research Article

An Improved Distance Matrix Computation Algorithm for Multicore Clusters

Table 2

Efficiency comparisons using 32 nodes.

Number of sequences (Length of sequence) ClustalW-MPI SSE2 DistVect

6,000 (858) 0.1899 0.0401 0.0642
3,000 (858) 0.2025 0.0414 0.0625
2,000 (1,750) 0.2087 0.0436 0.0677
4,000 (1,750) 0.2061 0.0449 0.0696
200 (30,500) 0.2578 0.0881 0.0910
50 (161,000) 0.2730 0.0823 0.0919
20 (163,650) 0.2901 0.0863 0.0919

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