Research Article
An Improved Distance Matrix Computation Algorithm for Multicore Clusters
Table 2
Efficiency comparisons using 32 nodes.
| Number of sequences (Length of sequence) | ClustalW-MPI | SSE2 | DistVect |
| 6,000 (858) | 0.1899 | 0.0401 | 0.0642 | 3,000 (858) | 0.2025 | 0.0414 | 0.0625 | 2,000 (1,750) | 0.2087 | 0.0436 | 0.0677 | 4,000 (1,750) | 0.2061 | 0.0449 | 0.0696 | 200 (30,500) | 0.2578 | 0.0881 | 0.0910 | 50 (161,000) | 0.2730 | 0.0823 | 0.0919 | 20 (163,650) | 0.2901 | 0.0863 | 0.0919 |
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