Research Article
An Improved Distance Matrix Computation Algorithm for Multicore Clusters
Table 3
Performance comparison (in GCUPS) for scanning the datasets.
| Number of sequences (Length of sequence) | DistVect1 | DistVect | SSE2 | ClustalW-MPI |
| 20 (163,650) | 2.32 | 0.79 | 0.84 | 0.25 | 2,000 (1,750) | 5.82 | 2.68 | 4.17 | 0.87 | 4,000 (1,750) | 6.27 | 2.81 | 4.36 | 0.95 | 3,000 (858) | 6.66 | 3.33 | 5.03 | 1.03 | 6,000 (858) | 6.69 | 3.26 | 5.22 | 1.10 | 200 (30,500) | 11.69 | 4.01 | 4.15 | 1.42 | 50 (161,000) | 7.03 | 2.39 | 2.67 | 0.80 | 500 (30,000) | 10.75 | 3.92 | 3.85 | 0.00 |
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