BioMed Research International / 2014 / Article / Tab 3

Research Article

An Improved Distance Matrix Computation Algorithm for Multicore Clusters

Table 3

Performance comparison (in GCUPS) for scanning the datasets.

Number of sequences (Length of sequence) DistVect1 DistVect SSE2 ClustalW-MPI

20 (163,650) 2.32 0.79 0.84 0.25
2,000 (1,750) 5.82 2.68 4.17 0.87
4,000 (1,750) 6.27 2.81 4.36 0.95
3,000 (858) 6.66 3.33 5.03 1.03
6,000 (858) 6.69 3.26 5.22 1.10
200 (30,500) 11.69 4.01 4.15 1.42
50 (161,000) 7.03 2.39 2.67 0.80
500 (30,000) 10.75 3.92 3.85 0.00

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