BioMed Research International / 2014 / Article / Tab 6

Research Article

An Improved Distance Matrix Computation Algorithm for Multicore Clusters

Table 6

DistVect1 comparison against other programs.

Software Platform Maximum sequence length Highest GCUPS Highest speedup

CUDASW++ 2 Dual-GPU GeForce GTX 295 59 k 28 (144–5478) 1.78 with (CUDASW++ 1.0)
CUDASW++ 3 Dual-GPU GeForce GTX 690 59 k 185.60 (144–5478) 3.2 with (CUDASW++ 2.0)
MC64-ClustalWP2 Intel Xeon Quad Core 300 k 0.92 7.76 with (ClustalW-MPI)
SSE2 Cell/BE 0.858 k 0.0058 76.20 with ClustalW sequential
ClustalW-MPI PC cluster 1100 0.07 14.5 with ClustalW sequential
DistVect1 Cluster of multicores 163 k 11.69 9.2 with (ClustalW-MPI)

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