Sequence Alignment Tools: One Parallel Pattern to Rule Them All?

Table 3

Alignment tools key.

Acronym	Tool	Version	Variant	Technology
bt-2.0.6	Bowtie2	2.0.6	original	Pthreads
bt-2.2.1	Bowtie2	2.2.1	original	Pthreads
bt-FF	Bowtie2	2.2.1	porting	FastFlow
BWA-MEM	BWA MEM	0.7.9a	original	Pthreads
BWA-MEM-FF	BWA MEM	0.7.9a	porting	FastFlow
BLASR	BLASR	2.1	original	Pthreads