Computational Prediction of Protein Function Based on Weighted Mapping of Domains and GO Terms

Table 2

Compare the impact of 𝑅_SCP on protein function prediction.

		Uniref50			SwissProt			TrEMBL
		MF	BP	CC	MF	BP	CC	MF	BP	CC
Predpfam2go	Precision	0.5568	0.6094	0.5978	0.4861	0.532	0.5557	0.3856	0.3482	0.3954
	Recall	0.441	0.2888	0.1747	0.6951	0.4496	0.2255	0.6176	0.6027	0.2255
	𝐹max	0.4922	0.3918	0.2704	0.5721	0.4873	0.3208	0.4748	0.4414	0.2872
Predweighted	Precision	0.2979	0.2502	0.1944	0.3514	0.2609	0.2611	0.3472	0.2179	0.2033
	Recall	0.7805	0.6959	0.8774	0.5946	0.6523	0.7603	0.7917	0.7011	0.8213
	𝐹max	0.4312	0.3681	0.3183	0.4417	0.3727	0.3887	0.4827	0.3325	0.3259
Predcombine	Precision	0.8506	0.8622	0.7503	0.8543	0.8577	0.7662	0.7641	0.7939	0.835
	Recall	0.6971	0.5823	0.7655	0.56	0.4093	0.5984	0.7662	0.6371	0.7309
	𝐹max	0.7662	0.6951	0.7578	0.6765	0.5542	0.672	0.7651	0.7069	0.7795

The best results are in bold.