The Characteristics of Ubiquitous and Unique Leptospira Strains from the Collection of Russian Centre for Leptospirosis

Table 1

Strains used in genotyping and phylogenetic analysis.

Number	Strain	Species	ST	Our submission ID or GenBank accession number for MLST genes	rpoB GenBank accession number	16S rDNA GenBank accession number
1	*GIMC2029:Li130	L. alexanderi, serogroup Manhao, serovar lichuan	207	337	KJ701742
2	*GIMC2051:Veldrat Bataviae 46	L. borgpetersenii, serogroup Javanica, serovar javanica	143	In MLST Home data base	KJ701733
3	*GIMC2052:Sari	L. borgpetersenii, serogroup Mini, serovar mini	142	In MLST Home data base	KJ701736
4	GIMC2002:101PJ	L. borgpetersenii, serogroup Javanica, serovar poi	146	339
5	GIMC2003:29PJ	L. borgpetersenii, serogroup Javanica, serovar poi	146	340	KJ701734
6	GIMC2004:Yaroslavl 7	L. borgpetersenii, serogroup Javanica, serovar poi	146	341
7	GIMC2005:1217PJ	L. borgpetersenii, serogroup Javanica, serovar javanica	146	342
8	GIMC2006:1622PJ	L. borgpetersenii, serogroup Javanica	146	343
9	GIMC2007:5-I	L. borgpetersenii, serogroup Javanica	146	344
10	*GIMC2049:Castellon 3	L. borgpetersenii, serogroup  Ballum, serovar castellonis	149	In MLST Home data base	KJ701737
11	*GIMC2050:Perepelitsin	L. borgpetersenii, serogroup Tarassovi, serovar tarassovi	153	In MLST Home data base	KJ701735
12	*GIMC2008:Mus 24	L. borgpetersenii, serogroup Sejroe, serovar saxkoebing	155	345
13	*GIMC2048:Naam	L. interrogans, serogroup Icterohaemorrhagiae, serovar naam	23	In MLST Home data base	KJ701731
14	GIMC2014:AV4	L. interrogans, serovar no data	23	351
15	*GIMC2047:Djasiman	L. interrogans, serogroup Djasiman, serovar djasiman	11	In MLST Home data base
16	*GIMC2046:RGA	L. interrogans, serogroup Icterohaemorrhagiae, serovar icterohaemorrhagiae	17	In MLST Home data base
17	GIMC2010:Sv-19	L. interrogans, serogroup Icterohaemorrhagiae	17	347
18	GIMC2009:Rn-2010	L. interrogans, serogroup Icterohaemorrhagiae, serovar copenhageni	17	346
19	GIMC2011:Rn-493	L. interrogans, serogroup Icterohaemorrhagiae, serovar copenhageni	17	348
20	GIMC2012:Rn-16	L. interrogans, serogroup Icterohaemorrhagiae, serovar copenhageni	17	349
21	GIMC2013:Rn-77	L. interrogans, serogroup Icterohaemorrhagiae, serovar copenhageni	17	350
22	*GIMC2042:Ezh-1  =  Jez Bratislava	L. interrogans, serogroup Australis, serovar bratislava	24	In MLST Home data base
23	*GIMC2043:Akiyami A	L. interrogans, serogroup Autumnalis, serovar autumnalis	27	In MLST Home data base
24	*GIMC2044:Zanoni	L. interrogans, serogroup Pyrogenes, serovar zanoni	31	In MLST Home data base	KJ701732
25	*GIMC2045:Hebdomadis	L. interrogans, serogroup Hebdomadis, serovar hebdomadis	36	In MLST Home data base
26	GIMC2015:Kashirsky	L. interrogans, serogroup Canicola, serovar canicola	37	352
27	GIMC2016:Mitronov	L. interrogans, serogroup Canicola, serovar canicola	37	353
28	GIMC2017:Bugay	L. interrogans, serogroup Canicola, serovar canicola	37	354
29	GIMC2018:Sobaka 2000	L. interrogans, serogroup Canicola, serovar canicola	37	355
30	GIMC2019:Udalov	L. interrogans, serogroup Canicola, serovar canicola	37	356
31	*GIMC2038:Ballico	L. interrogans, serogroup Australis, serovar australis	51	In MLST Home data base
32	*GIMC2039:3705	L. interrogans, serogroup Sejroe, serovar woffi	58	In MLST Home data base
33	*GIMC2040:Szwajizak	L. interrogans, serogroup Mini	73	In MLST Home data base
34	*GIMC2041:Pomona	L. interrogans, serogroup Pomona, serovar pomona	140	In MLST Home data base
35	*GIMC2020:M-20R	L. interrogans, serogroup Icterohaemorrhagiae, serovar copenhageni	199	357	KJ701730
36	GIMC2021:Abduloev	L. interrogans, serogroup Icterohaemorrhagiae, serovar copenhageni	199	358
37	GIMC2022:CL-11	L. interrogans, serogroup Icterohaemorrhagiae, serovar copenhageni	199	359
38	GIMC2030:CL-17	L. interrogans, serogroup Icterohaemorrhagiae, serovar copenhageni	206	336
39	*GIMC2023:Vleermuis 3868	L. kirschneri, serogroup Cynopteri, serovar cynopteri	70	360
40	*GIMC2024:Moskva V	L. kirschneri, serogroup Grippotyphosa, serovar grippotyphosa	110	361
41	GIMC2025:181PG	L. kirschneri, serogroup Grippotyphosa, serovar grippotyphosa	110	362	KJ701738
42	GIMC2026:617PG	L. kirschneri, serogroup Grippotyphosa, serovar grippotyphosa	110	363
43	GIMC2027:859PG	L. kirschneri, serogroup Grippotyphosa, serovar grippotyphosa	110	364
44	GIMC2028:1106PG	L. kirschneri, serogroup Grippotyphosa, serovar grippotyphosa	110	365
45	*GIMC2037:5621	L. kirschneri, serogroup Pomona, serovar mozdok	117	In MLST Home data base
46	*GIMC2031:HS 26R	L. kirschneri, serogroup Bataviae, serovar djatsi	204	334	KJ701739
47	*GIMC2033:LSU 1945	L. noguchii, serogroup Louisiana, serovar panama	169	In MLST Home data base	KJ701740
48	*GIMC2034:CZ 214 K	L. noguchii, serogroup Panama, serovar panama	171	In MLST Home data base	KJ701741
49	*GIMC2035:Celledoni	L. weilii, serogroup Celledoni, serovar celledoni	185	In MLST Home data base	KJ701746
50	*GIMC2036:Sarmin	L.  weilii, serogroup Sarmin, serovar sarmin	191	In MLST Home data base
51	*GIMC2032:CZ299U	L.  santarosai, serogroup Pomona, serovar tropica	208	338
52	GIMC2001:Bairam-Ali	L.  sp., serogroup Bairam-Ali, serovar bairam-ali		KJ676852-KJ676858	KJ701604	KJ701750
53	*GIMC2055:Lyme	L. inadai, serogroup Lyme, serovar lyme			KJ701743
54	GIMC2056:EMJH 86	L. inadai, serovar lyme			KJ701744
55	GIMC2057:Enr 88	L. inadai, serogroup Lyme-Detroit, serovar lyme-detroit			KJ701745
56	*GIMC2060:Sao Paulo	L. yanagawae, serogroup Semaranga, serovar sao paulo			KJ701747
57	GIMC2058:LT-8	L. biflexa, serovar patoc			KJ701748
58	GIMC2059:GR	L.  biflexa, serovar andamana			KJ701749
59	DSM 21527	Turneriella parva		NC_018020	CP002959	CP002959
60	80–412	L. alstoni, serovar pingchang			NZ_AOHD02000041.1	NZ_AOHD02000066.1
61	79601	L. alstoni, serovar sichuan				AY631881
62	L 60	L. alexanderi, serovar manhao 3			NZ_AHMT02000060.1
63	A23	L. alexanderi, serovar manzhuang				AY996803.1
64	A85	L. alexanderi, serovar mengla				DQ991481.1
65	M 6901	L. alexanderi, serovar nanding				AY996804
66	Mus 127	L. borgpetersenii, serovar ballum			EU747302
67	Lely 607	L. borgpetersenii, serogroup Sejroe, serovar hardjo				FJ154586
68	L550	L. borgpetersenii, serovar hardjo-bovis			CP000348.1
69	JB197	L. borgpetersenii, serovar hardjo-bovis			CP000350
70	Lely 607	L. borgpetersenii, serovar hardjo-bovis			EU747305
71	Veldrat Batavia 46	L. borgpetersenii, serovar javanica				AY887899.1
72	M84	L. borgpetersenii, serovar sejroe			EU747311
73	Perepelitsin	L. borgpetersenii, serovar tarassovi			EU747307	JQ988861.1
74	Whitticombi	L. borgpetersenii, serovar whitticombi			EU747314
75	Mini-CTG	L. borgpetersenii, serovar no data				JQ765635.1
76	Ballico	L. interrogans, serovar australis				FJ154556.1
77	Akiyami A	L. interrogans, serovar autumnalis				AM050580.1
78	Jez-bratislava	L. interrogans, serovar bratislava			EU747300
79	Mallika	L. interrogans, serovar bulgarica				AY996792.1
80	Hond Utrecht IV	L. interrogans, serovar canicola				FJ154561.1
81	Fiocruz L1-130	L. interrogans, serovar copenhageni	17	AE016823.1	AE016823.1
82	Djasiman	L. interrogans, serovar djasiman			EU747312	FJ154550.1
83	Hardjo_DB33	L. interrogans, serovar hardjo				JQ988854.1
84	RGA	L. interrogans, serovar icterohaemorrhagiae				NR_029361.1
85	Kremastos	L. interrogans, serovar kremastos				AY461868.1
86	IPAV	L.  interrogans, serovar lai			CP001221
87	LT 398	L. interrogans, serovar manilae				FJ154545.1
88	Hond HC	L. interrogans, serovar medanesis				DQ991471.1
89	Pomona	L. interrogans, serovar pomona			EU747306	AY996800.1
90	Salinem	L. interrogans, serovar pyrogenes				FJ154552.1
91	Vleermuis	L. interrogans, serovar schueffneri			EU747313
92	Szwajizak	L. interrogans, serovar szwajizak				DQ991466.1
93	3705	L. interrogans, serovar wolffi			EU747308
94	Zanoni	L. interrogans, serovar zanoni				DQ991473
95	Bataviae_DB59	L. interrogans, serovar no data				JQ988841.1
96	Agogo	L. kirschneri, serovar agogo				DQ991476.1
97	Bafani	L. kirschneri, serovar bafani				DQ991477.1
98	1051	L. kirschneri, serovar bim				AY996802.1
99	Butembo	L. kirschneri, serovar butembo				Q991478.1
100	3522 C	L. kirschneri, serovar cynopteri				FJ154546.1
101	Moskva V	L. kirschneri, serovar grippotyphosa			EU747301
102	Kambale	L. kirschneri, serovar kambale				AY461878.1
103	5621	L. kirschneri, serovar pomona				FJ154559.1
104	Wumalasena	L. kirschneri, serovar ratnapura				DQ991479.1
105	Bejo-Iso9	L. kmetyi, serovar malaysia		AHMP02000003	AHMP02000003	NR_041544.1
106	Hook	L. noguchii, serogroup Australis			EU349504
107	Bonito	L. noguchii, serogroup Autumnalis			EU349501
108	Caco	L. noguchii, serogroup Autumnalis			EU349498
109	Cascata	L. noguchii, serogroup Bataviae			EU349502
110	LSU 1945	L. noguchii, serogroup Louisiana			EU349505
111	1348U	L. noguchii, serovar claytoni				DQ991498.1
112	1996K	L. noguchii, serovar cristobali				DQ991497.1
113	M7	L. noguchii, serovar huallaga				DQ991499.1
114	1011	L. noguchii, serovar nicaragua			EU349499
115	LSU 2580	L. noguchii, serovar orleans			EU349500
116	CZ 214 K	L. noguchii, serovar panama			EU349497	NR_043050.1
117	DB57	L. noguchii, serovar panama			EU349501	JQ988837.1
118	HS 616	L. santarosai, serovar alexi				FJ154585.1
119	Alice	L. santarosai, serovar alice				DQ991493.1
120	MAVJ 401	L. santarosai, serovar arenal			AHMU02000055
121	LT 79	L. santarosai, serovar bakeri				FJ154589.1
122	LT 117	L. santarosai, serovar georgia				AY996805.1
123	CZ320	L. santarosai, serovar kobbe				DQ991495.1
124	1342	L. santarosai, serovar shermani				FJ154576.1
125	CZ390	L. santarosai, serovar weaveri				DQ991496.1
126	CBC613	L. santarosai, serovar no data			ANIH01000040
127	ST188	L. santarosai, serovar no data			AOHA02000081
128	MOR084	L. santarosai, serovar no data			AHON02000051
129	2000030832	L. santarosai, serovar no data			AFJN02000030
130	Celledoni	L. weilii, serovar celledoni				DQ991486.1
131	H27	L. weilii, serovar hekou				DQ991487.1
132	M39090	L. weilii, serovar langati				DQ991488.1
133	WB46	L. weilii, serovar sarmin				U12673.1
134	LT 89-68	L. weilii, serovar vughia				FJ154590.1
135	5399	L. broomii, serovar hurstbridge		AHMO02000008	AHMO02000008	AHMO02000008.1
136	BUT 6	L. fainei, serovar hurstbridge		AKWZ02000010	AKWZ02000010	NR_043049.1
137	BKID 6	L. fainei, serovar hurstbridge				AY996789.1
138	10	L. inadai, serovar lyme		AHMM02000025	AHMM02000015	AHMM02000015.1
139	VAR 010	L. licerasiae, serovar varillal		AHOO02000005	AHOO02000005	NR_044310.1
140	Khorat-H2	L. wolffii, serovar khorat		AKWX02000020		NZ_AKWX02000004.1
141	Patoc Ames	L. biflexa, serovar patoc		NC_010842	NC_010842	NC_010842
142	Patoc Paris	L. biflexa, serovar patoc		NC_010602	NC_010602
143	CH 11	L. biflexa, serovar andamana				FJ154577.1
144	Veldrat Semarang 173	L. meyeri, serovar semaranga				AF157089.1
145	Went 5	L. meyeri, serovar hardjo		AKXE01000002	AKXE01000001	NZ_AKXE01000007.1
146	LT 11-33 ATCC 700639	L. terpstrae, serovar hualin		AOGW02000006	AOGW02000010	NZ_AOGW02000008.1
147	Waz Holland ATCC 700522	L. vanthielii, serovar holland		AOGY02000070	AOGY02000051	NZ_AOGY02000072.1
148	CDC; ATCC 43284	L. wolbachii, serovar codice		AOGZ02000014	AOGZ02000008	NR_043046.1
149	Sao Paulo ATCC 700523	L. yanagawae, serovar saopaulo		AOGX02000015	AOGX02000024	Z_AOGX02000022.1
150	Eri-1(T) DSM 26084(T) = JCM 18486(T)	L. idonii, serogroup Hebdomadis				AB721966

The reference strains from GIMC.